# Bayesian Seemingly Unrelated Regression

## Documentation for package ‘BayesSUR’ version 1.0-4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BayesSUR | main function of the package
BayesSUR_internal | BayesSUR_internal
coef.BayesSUR | extract the posterior mean of the coefficients of a "BayesSUR" class object
elpd | measure the prediction accuracy by the expected log pointwise predictive density
example_eQTL | Simulated data set to mimic a small expression quantitative trait loci (eQTL) example
example_GDSC | Preprocessed data set to mimic a small pharmacogenetic example
fitted.BayesSUR | fitted response values corresponds to the posterior mean estimates
getEstimator | extract the posterior mean of the parameters
plot.BayesSUR | create a selection of plots for a "BayesSUR" class object
plotCPO | plot the conditional predictive ordinate
plotEstimator | plot the posterior mean estimators
plotManhattan | plot Manhattan-like plots for marginal posterior inclusion probabilities (mPIP) and numbers of responses of association for predictors
plotMCMCdiag | show trace plots and diagnostic density plots
plotNetwork | plot the network representation of the associations between responses and predictors
plotResponseGraph | plot the estimated graph for multiple response variables
predict.BayesSUR | predict responses corresponding to the posterior mean of the coefficients, return posterior mean of coefficients or indices of nonzero coefficients
print.BayesSUR | print a short summary of the Bayesian Seemingly Unrelated Regressions Fits
summary.BayesSUR | summarizing Bayesian Seemingly Unrelated Regressions Fits
targetGene | targetGene