aa	aa
AlphaSimR	AlphaSimR
bv	bv
c,HybridPop-method	HybridPop-class
c,MapPop-method	MapPop-class
c,Pop-method	Pop-class
c,RawPop-method	RawPop-class
calcGCA	calcGCA
cChr	cChr
dd	dd
doubleGenome	doubleGenome
ebv	ebv
editGenome	editGenome
editGenomeTopQtl	editGenomeTopQtl
fastRRBLUP	fastRRBLUP
genicVarA	genicVarA
genicVarAA	genicVarAA
genicVarD	genicVarD
genicVarG	genicVarG
genParam	genParam
getQtlMap	getQtlMap
getSnpMap	getSnpMap
gv	gv
hybridCross	hybridCross
HybridPop-class	HybridPop-class
LociMap-class	LociMap-class
makeCross	makeCross
makeCross2	makeCross2
makeDH	makeDH
MapPop-class	MapPop-class
meanG	meanG
meanP	meanP
mergeGenome	mergeGenome
mergePops	mergePops
mutate	mutate
newMapPop	newMapPop
newPop	newPop
nInd	nInd
pedigreeCross	pedigreeCross
pheno	pheno
Pop-class	Pop-class
popVar	popVar
pullIbdHaplo	pullIbdHaplo
pullQtlGeno	pullQtlGeno
pullQtlHaplo	pullQtlHaplo
pullSegSiteGeno	pullSegSiteGeno
pullSegSiteHaplo	pullSegSiteHaplo
pullSnpGeno	pullSnpGeno
pullSnpHaplo	pullSnpHaplo
quickHaplo	quickHaplo
randCross	randCross
randCross2	randCross2
RawPop-class	RawPop-class
reduceGenome	reduceGenome
resetPop	resetPop
RRBLUP	RRBLUP
RRBLUP2	RRBLUP2
RRBLUPMemUse	RRBLUPMemUse
RRBLUP_D	RRBLUP_D
RRBLUP_D2	RRBLUP_D2
RRBLUP_GCA	RRBLUP_GCA
RRBLUP_GCA2	RRBLUP_GCA2
RRBLUP_SCA	RRBLUP_SCA
RRBLUP_SCA2	RRBLUP_SCA2
RRsol-class	RRsol-class
runMacs	runMacs
runMacs2	runMacs2
sampleHaplo	sampleHaplo
selectCross	selectCross
selectFam	selectFam
selectInd	selectInd
selectOP	selectOP
selectWithinFam	selectWithinFam
self	self
selIndex	selIndex
selInt	selInt
setEBV	setEBV
setPheno	setPheno
setPhenoGCA	setPhenoGCA
show,Pop-method	Pop-class
show,RawPop-method	RawPop-class
SimParam	SimParam
smithHazel	smithHazel
TraitA-class	TraitA-class
TraitA2-class	TraitA2-class
TraitA2D-class	TraitA2D-class
TraitAD-class	TraitAD-class
TraitADE-class	TraitADE-class
TraitADEG-class	TraitADEG-class
TraitADG-class	TraitADG-class
TraitAE-class	TraitAE-class
TraitAEG-class	TraitAEG-class
TraitAG-class	TraitAG-class
usefulness	usefulness
varA	varA
varAA	varAA
varD	varD
varG	varG
varP	varP
writePlink	writePlink
writeRecords	writeRecords
[,HybridPop-method	HybridPop-class
[,MapPop-method	MapPop-class
[,Pop-method	Pop-class
[,RawPop-method	RawPop-class
