Quantitative Exploration of Elastic Net Families for Generalized Linear Models


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Documentation for package ‘eNetXplorer’ version 1.1.1

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eNetXplorer-package explores elastic net families for generalized linear models
breastCancerSurv gene signature for breast cancer survival
eNetXplorer generates family of elastic net models for different alphas
export generates plain text files from eNetXplorer object
H1N1_Flow longitudinal cell population frequencies and titer response upon H1N1 vaccination
Leukemia_miR microRNA expression of acute leukemia phenotypes
Leuk_miR_filt microRNA expression of acute leukemia phenotypes (filtered dataset)
Leuk_miR_full microRNA expression of acute leukemia phenotypes (full dataset)
plot generates plots from eNetXplorer object
plot.eNetXplorer generates plots from eNetXplorer object
plotContingency generates plot of response vs out-of-bag predictions across classes
plotFeatureCaterpillar generates caterpillar plot of feature statistics
plotFeatureHeatmap generates heatmap plot of feature statistics
plotKaplanMeier generates Kaplan-Meier plot of survival probability as a function of time
plotLambdaVsQF generates plot of quality function across 'lambda'
plotMeasuredVsOOB generates plot of response vs out-of-bag predictions across instances
plotSummary generates summary plots of model performance across alpha
plotSurvROC generates time-dependent ROC plots from Cox predicted risks
QuickStartEx synthetic dataset
summary generates list of model statistics
summary.eNetXplorer generates list of model statistics
summaryPDF generates PDF report with summary of main results