Subnational Data for the Covid-19 Outbreak


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Documentation for package ‘covidregionaldata’ version 0.5.0

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add_extra_na_cols Add extra columns filled with NA values to a dataset.
calculate_columns_from_existing_data Cumulative counts from daily counts or daily counts from cumulative, dependent on which columns already exist
complete_cumulative_columns Completes cumulative columns if rows were added with NAs.
convert_to_covid19R_format Convert data to Covid19R package data standard
csv_reader Custom CSV reading function
fill_empty_dates_with_na Add rows of NAs for dates where a region does not have any data
get_afghan_regional_cases Afghan Regional Daily COVID-19 Count Data
get_afghan_region_codes Afghan region codes
get_authority_lookup_table Lookup table for local authority structure for the UK
get_belgium_level_2_codes Belgian Provincial region codes
get_belgium_regional_cases_only_level_1 Belgian Regional Daily COVID-19 Count Data - Regions Only
get_belgium_regional_cases_with_level_2 Belgian Provincial Daily COVID-19 Count Data - Regions and Provinces
get_belgium_region_codes Belgian region codes
get_brazil_level_2_codes Brazilian level 2 codes (not available currently)
get_brazil_regional_cases_only_level_1 Brazilian Regional Daily COVID-19 Count Data - States
get_brazil_regional_cases_with_level_2 Brazilian Regional Daily COVID-19 Count Data - Cities
get_brazil_region_codes Brazilian region codes
get_canada_regional_cases Canadian Regional Daily COVID-19 Count Data - Provinces
get_canada_region_codes Canadian region codes
get_colombia_regional_cases Colombian Regional Daily COVID-19 Count Data - Department
get_colombia_region_codes Colombia region codes
get_cumulative_from_daily Cumulative counts from daily counts.
get_daily_from_cumulative Daily counts from data that is in cumulative form.
get_ecdc_cases ECDC International Case Counts: works within get_national_data
get_germany_level_2_codes German level 2 codes (not available currently)
get_germany_regional_cases_only_level_1 German Regional Daily COVID-19 Count Data - Bundesland
get_germany_regional_cases_with_level_2 German Regional Daily COVID-19 Count Data - Landkreis
get_germany_region_codes German region codes
get_india_regional_cases Indian Regional Daily COVID-19 Count Data - State
get_india_region_codes Indian region codes
get_info_covidregionaldata Get meta information about the covidregionaldata refresh_* data getters.
get_interventions_data Import ACAPS Government Interventions dataset
get_italy_regional_cases Regional Daily COVID-19 Count Data
get_italy_region_codes Italian region codes
get_level_2_region_codes Get a table of level 2 region codes (FIPS, ONS, region) for a specified country
get_linelist Get Linelist Data
get_national_data Get national-level data for countries globally, sourced from the ECDC or WHO.
get_regional_data The main calculation function for covidregionaldata. The majority of the work is done in this function.
get_region_codes Get a table of region codes for a specified country
get_russia_regional_cases Russian Regional Daily COVID-19 Count Data - Region
get_russia_region_codes Russian region codes
get_uk_level_2_codes UK level 2 codes (ONS) (Included in original function)
get_uk_regional_cases_only_level_1 UK Regional Daily COVID-19 Count Data - Region
get_uk_regional_cases_with_level_2 UK Regional Daily COVID-19 Count Data - Authority
get_uk_region_codes UK region codes (NULL - they're in the raw data already)
get_us_level_2_codes US level 2 codes (FIPS) (Included in original function)
get_us_regional_cases_only_level_1 US Regional Daily COVID-19 Count Data - States
get_us_regional_cases_with_level_2 US Regional Daily COVID-19 Count Data - Counties
get_us_region_codes US region codes
get_who_cases Download the most recent WHO case data
left_join_region_codes Custom left_join function
refresh_covidregionaldata_afghanistan Get daily Afghan COVID-19 count data by Province (Wilayat)
refresh_covidregionaldata_belgium Get daily Belgian COVID-19 count data by Region
refresh_covidregionaldata_brazil Get daily Brazilian COVID-19 count data by State (Estado)
refresh_covidregionaldata_canada Get daily Canada COVID-19 count data by Province/Territory
refresh_covidregionaldata_colombia Get daily Colombian COVID-19 count data by Department (Departamento).
refresh_covidregionaldata_germany Get daily German COVID-19 count data by State (Bundesland)
refresh_covidregionaldata_india Get daily Indian COVID-19 count data by State/Unified Territory
refresh_covidregionaldata_italy Get daily Italian COVID-19 count data by Region (Regioni).
refresh_covidregionaldata_russia Get daily Russian COVID-19 count data by Russian region.
refresh_covidregionaldata_uk Get daily UK COVID-19 count data by EU-defined region
refresh_covidregionaldata_usa Get daily USA COVID-19 count data by state.
rename_region_code_column Helper to rename the region code column in each dataset to the correct code type for each country (e.g. ISO-3166-2).
rename_region_column Helper to rename the region column in each dataset to the correct name for each country.
reset_cache Reset Cache and Update all Local Data
set_negative_values_to_zero Set negative data to 0
start_using_memoise Add useMemoise to options
stop_using_memoise Stop using useMemoise
totalise_data Get totals data given the time series data.