Package: xhmmScripts
Type: Package
Title: XHMM R scripts
Version: 1.1
Date: 2014-05-21
Author: Menachem Fromer
Maintainer: Menachem Fromer <fromer@broadinstitute.org>
Description: R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
License: GPL-2
Depends: R (>= 2.14.0)
Imports: gplots, plotrix
Suggests:
URL: http://atgu.mgh.harvard.edu/xhmm
BugReports: http://groups.google.com/a/broadinstitute.org/group/xhmm-users
Packaged: 2014-06-15 05:22:09 UTC; fromem03
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-15 07:38:03
Built: R 3.5.3; ; 2020-04-22 04:44:47 UTC; windows
