SNP_time_series-class   An S4 class storing time series data
ex_dat                  Example data set
hbr-class               An S4 class storing results from
                        haplotype-block reconstruction
initialize_SNP_time_series
                        Initialization of time series data as input for
                        haplotype reconstruction
inspect_window,hbr-method
                        Haplotype-block marker inspection for a window
inspect_window_PCA,hbr-method
                        PCA of haplotype-block marker for a window
inspect_window_avLink,hbr-method
                        Hierachical clustering of haplotype-block
                        marker for a window
inspect_window_dbScan,hbr-method
                        Clustering with the dbscan algorithm
map,hbr-method          Map from reconstructed haplotype-blocks to
                        windows
markers,hbr-method      Markers of the specified reconstructed
                        haplotype-block
number_hbr,hbr-method   The number of reconstructed haplotype-block
plot,hbr-method         Method to visualize reconstructed
                        haplotype-blocks
plot_cluster_trajectories,hbr-method
                        Method to visualize the trajectories for all
                        identified clusters in a window
plot_hbr_freq,hbr-method
                        Plots frequencies of a reconstructed
                        haplotype-block along the chromosome
plot_marker_trajectories,hbr-method
                        Method to visualize the trajectories for all
                        markers in a haplotype-block
reconstruct_hb,SNP_time_series-method
                        Reconstruction of haplotype-blocks
rev_map,hbr-method      Map from windows to reconstructed
                        haplotype-blocks
show,SNP_time_series-method
                        Display of a SNP_time_series object
show,hbr-method         Display of a hbr object
summary,hbr-method      Method to summarize information of
                        reconstructed haplotype-blocks
sync_to_frequencies     Data input from a sync file
