# Simulate Expression Data from 'igraph' Networks

## Documentation for package ‘graphsim’ version 0.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

generate_expression | Generate Simulated Expression
make_adjmatrix | Generate Adjacency Matrix
make_adjmatrix_graph | Generate Adjacency Matrix
make_commonlink | Generate Common Link Matrix
make_commonlink_adjmat | Generate Common Link Matrix
make_commonlink_graph | Generate Common Link Matrix
make_distance_adjmat | Generate Distance Matrix
make_distance_graph | Generate Distance Matrix
make_relationship | Generate Distance Matrix
make_sigma | Generate Sigma Matrix
make_sigma_mat_adjmat | Generate Sigma Matrix
make_sigma_mat_dist_adjmat | Generate Sigma Matrix
make_sigma_mat_dist_graph | Generate Sigma Matrix
make_sigma_mat_graph | Generate Sigma Matrix
make_state_matrix | Make State Matrix
Pi3K_AKT_graph | PI3K/AKT activation
Pi3K_graph | PI3K Cascade
plot_directed | Extensions to iGraph for Customising plots
RAF_MAP_graph | #' RAF/MAP kinase cascade
TGFBeta_Smad_graph | TGF-beta receptor signaling activates SMADs