# Quantitative Exploration of Elastic Net Families for Generalized Linear Models

## Documentation for package ‘eNetXplorer’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

eNetXplorer-package | explores elastic net families for generalized linear models
breastCancerSurv | gene signature for breast cancer survival
eNetXplorer | generates family of elastic net models for different alphas
export | generates plain text files from eNetXplorer object
H1N1_Flow | longitudinal cell population frequencies and titer response upon H1N1 vaccination
Leukemia_miR | microRNA expression of acute leukemia phenotypes
Leuk_miR_filt | microRNA expression of acute leukemia phenotypes (filtered dataset)
Leuk_miR_full | microRNA expression of acute leukemia phenotypes (full dataset)
plot | generates plots from eNetXplorer object
plot.eNetXplorer | generates plots from eNetXplorer object
plotContingency | generates plot of response vs out-of-bag predictions across classes
plotFeatureCaterpillar | generates caterpillar plot of feature statistics
plotFeatureHeatmap | generates heatmap plot of feature statistics
plotKaplanMeier | generates Kaplan-Meier plot of survival probability as a function of time
plotLambdaVsQF | generates plot of quality function across 'lambda'
plotMeasuredVsOOB | generates plot of response vs out-of-bag predictions across instances
plotSummary | generates summary plots of model performance across alpha
plotSurvROC | generates time-dependent ROC plots from Cox predicted risks
QuickStartEx | synthetic dataset
summary | generates list of model statistics
summary.eNetXplorer | generates list of model statistics
summaryPDF | generates PDF report with summary of main results