Package: binGroup2
Type: Package
Title: Identification and Estimation using Group Testing
Version: 1.0.2
Date: 2020-04-06
Authors@R: c(person("Brianna", "Hitt", role=c("aut", "cre"), email="brianna.hitt@huskers.unl.edu", comment=c(ORCID="0000-0002-0645-0067")), 
             person("Christopher", "Bilder",  role="aut", comment=c(ORCID="0000-0002-2848-8576")), 
             person("Frank", "Schaarschmidt", role="aut", comment=c(ORCID="0000-0002-6599-3803")),
             person("Brad", "Biggerstaff", role="aut", comment=c(ORCID="0000-0002-3105-3530")),
             person("Christopher", "McMahan", role="aut", comment=c(ORCID="0000-0001-5056-9615")), 
             person("Joshua", "Tebbs", role="aut", comment=c(ORCID="0000-0002-6762-7241")), 
             person("Boan", "Zhang", role="ctb"), 
             person("Michael", "Black", role="ctb"),
             person("Peijie", "Hou", role="ctb"),
             person("Peng", "Chen", role="ctb"))
Maintainer: Brianna Hitt <brianna.hitt@huskers.unl.edu>
Description: Methods for the group testing identification problem: 1) Operating 
    characteristics (e.g., expected number of tests) for commonly used 
    hierarchical and array-based algorithms, and 2) Optimal testing 
    configurations for these same algorithms. Calculations for algorithms with 
    single-disease assays are described in Hitt et al. (2019) 
    <doi:10.1002/sim.8341> and with multiplex assays are described in Bilder 
    et al. (2019) <doi:10.1111/biom.12988> and Hou et al. (2020) 
    <doi:10.1093/biostatistics/kxy058>. Methods for the group testing 
    estimation problem: 1) Estimation and inference procedures for an overall 
    prevalence, and 2) Regression modeling for commonly used hierarchical and 
    array-based algorithms. Estimation and confidence interval methods are 
    described in Biggerstaff (2008) <doi:10.1198/108571108X379055> and 
    Hepworth & Biggerstaff (2017) <doi:10.1007/s13253-017-0297-2>. 
    Regression modeling is described in Xie (2001) <doi:10.1002/sim.817>.
Imports: graphics, grDevices, partitions, rBeta2009, Rcpp (>= 1.0.0),
        Rdpack, stats, utils
RdMacros: Rdpack
LinkingTo: Rcpp, RcppArmadillo
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
NeedsCompilation: yes
Packaged: 2020-04-07 04:50:07 UTC; bhitt
Author: Brianna Hitt [aut, cre] (<https://orcid.org/0000-0002-0645-0067>),
  Christopher Bilder [aut] (<https://orcid.org/0000-0002-2848-8576>),
  Frank Schaarschmidt [aut] (<https://orcid.org/0000-0002-6599-3803>),
  Brad Biggerstaff [aut] (<https://orcid.org/0000-0002-3105-3530>),
  Christopher McMahan [aut] (<https://orcid.org/0000-0001-5056-9615>),
  Joshua Tebbs [aut] (<https://orcid.org/0000-0002-6762-7241>),
  Boan Zhang [ctb],
  Michael Black [ctb],
  Peijie Hou [ctb],
  Peng Chen [ctb]
Repository: CRAN
Date/Publication: 2020-04-07 16:00:06 UTC
Built: R 3.5.3; x86_64-w64-mingw32; 2020-04-22 05:39:45 UTC; windows
Archs: i386, x64
