beastier-package	beastier
are_beast2_input_lines	are_beast2_input_lines
are_beast2_input_lines_deep	are_beast2_input_lines_deep
are_beast2_input_lines_fast	are_beast2_input_lines_fast
are_identical_alignments	are_identical_alignments
beast2_internal_filenames_to_table	beast2_internal_filenames_to_table
beast2_options_to_table	beast2_options_to_table
beastier	beastier
check_beast2	check_beast2
check_beast2_internal_filenames	check_beast2_internal_filenames
check_beast2_options	check_beast2_options
check_beast2_optionses	check_beast2_optionses
check_beast2_path	check_beast2_path
check_can_create_file	check_can_create_file
check_input_filename	check_input_filename
check_n_threads	check_n_threads
check_os	check_os
check_rng_seed	check_rng_seed
create_beast2_internal_filenames	create_beast2_internal_filenames
create_beast2_options	create_beast2_options
create_beast2_run_cmd	create_beast2_run_cmd
create_beast2_validate_cmd	create_beast2_validate_cmd
create_beast2_validate_cmd_bin	create_beast2_validate_cmd_bin
create_beast2_validate_cmd_jar	create_beast2_validate_cmd_jar
create_beast2_version_cmd	create_beast2_version_cmd
create_beast2_version_cmd_bin	create_beast2_version_cmd_bin
create_beast2_version_cmd_jar	create_beast2_version_cmd_jar
create_temp_input_filename	create_temp_input_filename
create_temp_state_filename	create_temp_state_filename
default_params_doc	default_params_doc
do_minimal_run	do_minimal_run
get_alignment_ids_from_xml_filename	get_alignment_ids_from_xml_filename
get_beast2_example_filename	get_beast2_example_filename
get_beast2_example_filenames	get_beast2_example_filenames
get_beast2_main_class_name	get_beast2_main_class_name
get_beast2_options_filenames	get_beast2_options_filenames
get_beast2_version	get_beast2_version
get_beastier_path	get_beastier_path
get_beastier_paths	get_beastier_paths
get_default_beast2_bin_path	get_default_beast2_bin_path
get_default_beast2_download_url	get_default_beast2_download_url
get_default_beast2_download_url_linux	get_default_beast2_download_url_linux
get_default_beast2_download_url_win	get_default_beast2_download_url_win
get_default_beast2_folder	get_default_beast2_folder
get_default_beast2_jar_path	get_default_beast2_jar_path
get_default_beast2_path	get_default_beast2_path
get_default_java_path	get_default_java_path
get_duplicate_param_ids	get_duplicate_param_ids
get_java_version	get_java_version
get_trees_filenames	get_trees_filenames
gives_beast2_warning	gives_beast2_warning
has_unique_ids	has_unique_ids
install_beast2	install_beast2
is_alignment	is_alignment
is_beast2_input_file	is_beast2_input_file
is_beast2_installed	is_beast2_installed
is_bin_path	is_bin_path
is_jar_path	is_jar_path
is_on_appveyor	is_on_appveyor
is_on_ci	is_on_ci
is_on_travis	is_on_travis
print_beast2_internal_filenames	print_beast2_internal_filenames
print_beast2_options	print_beast2_options
remove_file_if_present	remove_file_if_present
run_beast2	run_beast2
run_beast2_from_options	run_beast2_from_options
save_lines	save_lines
save_nexus_as_fasta	save_nexus_as_fasta
uninstall_beast2	uninstall_beast2
update_beastier	update_beastier
upgrade_beast2	upgrade_beast2
