# An R Port of the 'ImageJ' Plugin 'Auto Threshold'

## Documentation for package ‘autothresholdr’ version 1.3.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

apply_mask | Automatically threshold an array of non-negative integers.
arr_mask | Array mask class.
auto_thresh | Automatically threshold an array of non-negative integers.
auto_thresh_apply_mask | Automatically threshold an array of non-negative integers.
auto_thresh_mask | Automatically threshold an array of non-negative integers.
mask | Automatically threshold an array of non-negative integers.
mean_stack_thresh | Threshold every image frame in an image stack based on their mean.
med_stack_thresh | Threshold every image frame in a stack based on their median.
stack_threshed_img | Stack-thresholded image class.
th | Automatically found threshold class.
threshed_arr | Thresholded array class.