10SNPs.map              Plink sample PED data
10SNPs.ped              Plink sample PED data
CalcFractionsMultiLoglik
                        Calculates the loglikelihood for placing a
                        sample 100 percent back into its own sample
                        site
ConvertMicrosatData     Microsatellite file conversion for known and
                        unknown data
ConvertPEDData          Plink PED file conversion
ConvertUnknownPEDData   Plink PED file conversion for known and unknown
                        data
FindRhoParameterCrossValidation
                        Finds the appropriate value of the Rho
                        parameter via crossvalidation.
FitAdmixedModelFindUnknowns
                        Fit the OriGen model and place unknown
                        individuals who may be admixed
FitMultinomialAdmixedModelFindUnknowns
                        Fit the multinomial OriGen model and place
                        unknown individuals who may be admixed
FitMultinomialModel     Fit OriGen allele frequency surfaces
FitMultinomialModelFindUnknowns
                        Fit OriGen microsatellite allele frequency
                        surfaces
FitOriGenModel          Fit OriGen allele frequency surfaces
FitOriGenModelFindUnknowns
                        Fit the OriGen model and place unknown
                        individuals
GenerateHeatMaps        Fit OriGen microsatellite allele frequency
                        surfaces
Locations               Locations of individuals in 10SNPs
LocationsTrialDataSmall
                        Locations of individuals in
                        MicrosatTrialDataSmall
MicrosatTrialDataSmall
                        Genotypes of individuals in located at
                        LocationsTrialDataSmall
OriGen-package          Fast Spatial Ancestry via Flexible Allele
                        Frequency Surfaces
PlotAdmixedSurface      Plots admixture fraction results
PlotAlleleFrequencySurface
                        Plots an OriGen fitted allele frequency surface
PlotAlleleFrequencySurfaceOld
                        Plots an OriGen fitted allele frequency surface
PlotUnknownHeatMap      Plots a heat map depicting the probability an
                        unknown individual comes from each block
RankSNPsLRT             Rank the SNPs based on the likelihood ratio
                        test.
