Classes and Functions to Serve as the Basis for Other 'Gx' Packages

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Documentation for package ‘CoreGx’ version 0.1.0

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.CoreSet A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
.GetSupportVec .GetSupportVec
amcc Calculate an Adaptive Matthews Correlation Coefficient
cellInfo cellInfo Generic
cellInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellInfo<- cellInfo<- Generic
cellInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames cellNames Generic
cellNames-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames<- cellNames<- Generic
cellNames<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
checkCSetStructure A function to verify the structure of a CoreSet
Cleveland_small Cleaveland_mut RadioSet subsetted and cast as CoreSet
connectivityScore Function computing connectivity scores between two signatures
CoreSet CoreSet constructor
CoreSet-class A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cosinePerm Computes the cosine similarity and significance using permutation test
cSetName cSetName Generic
cSetName-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
dateCreated dateCreated Generic
dateCreated-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
distancePointLine Calculate shortest distance between point and line
distancePointSegment Calculate shortest distance between point and line segment
examineGOF Getter for attributes of an object
featureInfo featureInfo Generic
featureInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
featureInfo<- featureInfo<- Generic
featureInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
fNames fNames Generic
fNames-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
gwc Calculate the gwc score between two vectors, using either a weighted spearman or pearson correlation
intersectList Utility to find the intersection between a list of more than two vectors or lists
mcc Compute a Mathews Correlation Coefficient
mDataNames mDataNames Generic
mDataNames-method mDataNames
molecularProfiles molecularProfiles Generic
molecularProfiles-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
molecularProfiles<- molecularProfiles<- Generic
molecularProfiles<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber pertNumber Generic
pertNumber-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber<- pertNumber<- Generic
pertNumber<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo phenoInfo Generic
phenoInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo<- phenoInfo<- Generic
phenoInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo sensitivityInfo Generic
sensitivityInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo<- sensitivityInfo<- Generic
sensitivityInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityMeasures sensitivityMeasures Generic
sensitivityMeasures-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles sensitivityProfiles Generic
sensitivityProfiles-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles<- sensitivityProfiles<- Generic
sensitivityProfiles<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber sensNumber Generic
sensNumber-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber<- sensNumber<- Generic
sensNumber<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
show-method Show a CoreSet
symSetDiffList Utility to find the symmetric set difference of a list of two or more vectors or lists
unionList Utility to find the union between a list of more than two vectors or lists