# Classes and Functions to Serve as the Basis for Other 'Gx' Packages

## Documentation for package ‘CoreGx’ version 0.1.0

- DESCRIPTION file.

## Help Pages

.CoreSet | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
.GetSupportVec | .GetSupportVec
amcc | Calculate an Adaptive Matthews Correlation Coefficient
cellInfo | cellInfo Generic
cellInfo-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellInfo<- | cellInfo<- Generic
cellInfo<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames | cellNames Generic
cellNames-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames<- | cellNames<- Generic
cellNames<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
checkCSetStructure | A function to verify the structure of a CoreSet
Cleveland_small | Cleaveland_mut RadioSet subsetted and cast as CoreSet
connectivityScore | Function computing connectivity scores between two signatures
CoreSet | CoreSet constructor
CoreSet-class | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cosinePerm | Computes the cosine similarity and significance using permutation test
cSetName | cSetName Generic
cSetName-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
dateCreated | dateCreated Generic
dateCreated-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
distancePointLine | Calculate shortest distance between point and line
distancePointSegment | Calculate shortest distance between point and line segment
examineGOF | Getter for attributes of an object
featureInfo | featureInfo Generic
featureInfo-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
featureInfo<- | featureInfo<- Generic
featureInfo<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
fNames | fNames Generic
fNames-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
gwc | Calculate the gwc score between two vectors, using either a weighted spearman or pearson correlation
intersectList | Utility to find the intersection between a list of more than two vectors or lists
mcc | Compute a Mathews Correlation Coefficient
mDataNames | mDataNames Generic
mDataNames-method | mDataNames
molecularProfiles | molecularProfiles Generic
molecularProfiles-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
molecularProfiles<- | molecularProfiles<- Generic
molecularProfiles<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber | pertNumber Generic
pertNumber-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber<- | pertNumber<- Generic
pertNumber<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo | phenoInfo Generic
phenoInfo-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo<- | phenoInfo<- Generic
phenoInfo<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo | sensitivityInfo Generic
sensitivityInfo-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo<- | sensitivityInfo<- Generic
sensitivityInfo<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityMeasures | sensitivityMeasures Generic
sensitivityMeasures-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles | sensitivityProfiles Generic
sensitivityProfiles-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles<- | sensitivityProfiles<- Generic
sensitivityProfiles<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber | sensNumber Generic
sensNumber-method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber<- | sensNumber<- Generic
sensNumber<--method | A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
show-method | Show a CoreSet
symSetDiffList | Utility to find the symmetric set difference of a list of two or more vectors or lists
unionList | Utility to find the union between a list of more than two vectors or lists