# Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'

## Documentation for package ‘ArchaeoPhases’ version 1.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ArchaeoPhases-package | ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'
app_ArchaeoPhases | Run ArchaeoPhases shiny apps
ArchaeoPhases | ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'
coda.mcmc | Create a 'mcmc.list' object for CODA users.
CreateMinMaxGroup | Constructing the minimum and the maximum for a group of dates(phase)
CredibleInterval | Bayesian credible interval
DatesHiatus | Test for the existence of a hiatus between two parameters
Events | Events
Fishpond | Polynesian fishpond site on the island of Oahu, Hawaii.
ImportCSV | Importing a CSV file containing the output of the MCMC algorithm
ImportCSV.BCal | Importing a BCal csv file
KADatesChronoModel | Ksar Akil chronology build with ChronoModel software. Dates part.
KADatesOxcal | Ksar Akil chronology build with Oxcal software
KAPhasesChronoModel | Ksar Akil chronology build with ChronoModel software. Phases part.
MarginalPlot | Plot of a marginal posterior density
MarginalProba | Bayesian test for anteriority / posteriority between two parameters
MarginalStatistics | Marginal summary statistics
MultiCredibleInterval | Bayesian credible intervals for a series of dates
MultiDatesPlot | Plot of the endpoints of credible intervals or HPD intervals of a series of dates
MultiHPD | Bayesian highest posterior density regions for a series of MCMC chains
MultiPhasePlot | Plot of the marginal posterior densities of several groups
MultiPhasesGap | Gap/Hiatus between a succession of groups (for groups in temporal order constraint)
MultiPhasesTransition | Transition range for a succession of groups (for groups in temporal order constraint)
MultiPhaseTimeRange | Phase Time Range for multiple groups
MultiSuccessionPlot | Successive Phases Density Plots (for groups in temporal order constraint)
OccurrencePlot | Plot of the occurence of events
PhaseDurationPlot | Plot of the duration of a group
PhasePlot | Plot of the characteristics of a group of dates
Phases | Phases
PhasesGap | Gap or Hiatus between two successive phases (for phases in temporal order constraint)
PhaseStatistics | Summary statistics of a phase
PhasesTransition | Transition range between two successive phases (for phases in temporal order constraint)
PhaseTimeRange | Phase Time Range
SuccessionPlot | Density Plots of two successive groups (for groups in temporal order constraint)
TempoActivityPlot | Plot of the activity of events
TempoPlot | Plot of the occurence of events