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| AugmentSigMatrix | Make an augmented signature matrix |
| buildSpilloverMat | Build a spillover matrix |
| clustWspillOver | Cluster with spillover |
| collapseCellTypes | Collapse cell yypes |
| estCellCounts.nPass | Deconvolve with an n-pass spillover matrix |
| estCellPercent | Wrapper for deconvolution methods |
| estCellPercent.DCQ | DCQ Deconvolution |
| estCellPercent.DeconRNASeq | DeconRNASeq deconvolution |
| estCellPercent.nnls | Non-negative least squares deconvolution |
| estCellPercent.proportionsInAdmixture | WGCNA::proportionsInAdmixture deconvolution |
| estCellPercent.spillOver | Estimate cell percentage from spillover |
| estCellPercent.svmdecon | SVMDECON deconvolution |
| getLM22cells | LM22 look up table |
| hierarchicalClassify | Hierarchical Deconvolution |
| hierarchicalSplit | Build hierarchical cell clusters. |
| Licenses | Licenses required by Celgene legal |
| LM22 | Leukocyte 22 data matrix |
| loadMGSM27 | Load MGSM27 |
| loadModMap | LM22 to xCell LUT |
| MGSM27 | Myeloma Genome Signature Matrix 27 |
| missForest.par | Use parallel missForest to impute missing values. |
| rankByT | Rank genes for each cell type |
| remakeLM22p | Make an Augmented Signature Matrix |
| spillToConvergence | Spillover to convergence |
| SVMDECON | Support vector machine deconvolution |
| weightNorm | SVMDECONV helper function |