A_missing               Calculate the amount of each component for
                        samples not involved in model building
abs_data                raw data from absorbance measurements, 5cm
                        pathlength
abs_fit_slope           Fit absorbance data to exponential curve. 'drm'
                        is used for the fitting process.
abs_parms               Calculating slopes and slope ratios of a data
                        frame of absorbance data.
absorbance_read         Reading absorbance data from txt and csv files.
as.data.frame.eem       Converting EEM data from class eem to
                        data.frame.
blank                   blank samples
eem2array               Data from an eemlist is transformed into an
                        array
eem_absdil              Multiply absorbance data according to the
                        dilution and remove absorbance from samples
                        where undiluted data is used.
eem_checkdata           Check your EEM, absorption and metadata before
                        processing
eem_corrections         Return names of samples where certain
                        corrections are missing.
eem_dilcorr             Create table how samples should be corrected
                        because of dilution
eem_dilution            Modifying fluorescence data according to
                        dilution.
eem_duplicates          Check for duplicate sample names
eem_easy                Opens an R markdown template for an easy and
                        userfriendly analysis of EEM data.
eem_eemdil              Correct names of EEM samples to match undiluted
                        absorbance data.
eem_exclude             Exclude complete wavelengths or samples form
                        data set
eem_getextreme          Determines the the biggest range of EEM
                        spectrum where data is available from each
                        sample.
eem_ife_correction      Wrapper function to allow
                        eem_inner_filter_effect (eemR) handling
                        different cuvette lengths.
eem_import_dir          Load all eemlist obects saved in different
                        Rdata files in folder
eem_interp              Missing values are interpolated within EEM data
eem_is.na               Check for NAs in EEM data
eem_list                Fluorescence data of 52 corrected samples.
eem_metatemplate        Create table that contains sample names and
                        locations of files.
eem_name_replace        Replace matched patterns in sample names
eem_overview_plot       Plot fluorescence data from several samples
                        split into several plots.
eem_parafac             Runs a PARAFAC analysis on EEM data
eem_raman_area          Calculate raman area of EEM samples
eem_raman_normalisation2
                        Wrapper function to eem_raman_normalisation
                        (eemR).
eem_range               Cut EEM data matching a given wavelength range
eem_red2smallest        Reduce wavelength range of EEM spectra to
                        widest available in the whole sample set.
eem_rem_scat            Remove Raman and Rayleigh scattering in
                        fluorescence data
eem_scale_ext           Determine the range of fluorescence values in a
                        set of samples
eem_smooth              Smooth fluorescence data by calculating rolling
                        mean along excitation wavelengths.
eempf4analysis          Create table of PARAFAC components and
                        (optionally) EEM peaks and indices as well as
                        absorbance slope parameters.
eempf_comp_load_plot    Plot components from a PARAFAC model
eempf_comp_mat          Extract EEM matrix for single components
                        determined in the PARAFAC analysis
eempf_compare           Plot a set of PARAFAC models to compare the
                        single components
eempf_comps3D           3D plots of PARAFAC components
eempf_corcondia         Calculate the core consistancy of an EEM
                        PARAFAC model
eempf_corplot           Plot correlations of components in samples
eempf_cortable          Calculating correlations between the component
                        loadings in all samples (C-Modes).
eempf_eemqual           Calculating EEMqual which is an indicator of a
                        PARAFAC model's quality
eempf_export            Create one table containing the PARAFAC models
                        factors and optionally exporting it to csv or
                        txt
eempf_fits              Fits vs. components of PARAFAC models are
                        plotted
eempf_leverage          Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        single PARAFAC model
eempf_leverage_data     Combine leverages into one data frame and add
                        optional labels.
eempf_leverage_ident    Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_leverage_plot     Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_load_plot         Plot amount of each component in each sample as
                        bar plot
eempf_mleverage         Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        list of PARAFAC models
eempf_openfluor         Write out PARAFAC components to submit to
                        openfluor.org.
eempf_plot_comps        Plot all components of PARAFAC models
eempf_report            Create a html report of a PARAFAC analysis
eempf_rescaleBC         Rescale B and C modes of PARAFAC model
eempf_residuals         Calculate residuals of EEM data according to a
                        certain model
eempf_residuals_plot    Plot samples by means of whole sample, each
                        single component and residuum
ggeem                   EEM spectra plotted with ggplot2
list_join               Full join of a list of data frames.
maxlines                Extract data from emission and excitation
                        wavelengths of the components of a PARAFAC
                        model
norm2A                  Compensate for normalisation in C-modes
norm_array              Normalise 3-dimensional array in first and
                        second dimension
pfres_comps             PARAFAC model
pfres_comps2            Absorption data of 7 samples
sh                      result from PARAFAC split-half analysis
splithalf               Running a Split-Half analysis on a PARAFAC
                        model
splithalf_plot          Plot results from a splithalf analysis
splithalf_splits        Extracting a list of sample names in each
                        subsample from a splithalf analysis
splithalf_tcc           Extracting TCC values from a splithalf analysis
tcc                     Caluclate Tucker's Congruence Coefficient of
                        PARAFAC components
tcc_find_pairs          Reorders components of different PARAFAC models
                        according to best fit (TCC)
