bpdata                  Boiling Point Data
cdk.version             Get Current CDK Version
cdkFormula-class        Class cdkFormula, a class for handling
                        molecular formula
compare.isotope.pattern
                        Compare isotope patterns.
do.aromaticity          Perform Aromaticity Detection, atom typing or
                        isotopic configuration
eval.atomic.desc        Evaluate an Atomic Descriptor
eval.desc               Evaluate a Molecular Descriptor
generate.2d.coordinates
                        Generate 2D Coordinates from Connectivity
                        Information
generate.formula        Generate molecular formulae given a target mass
                        and a set of elements and counts.
get.adjacency.matrix    Get adjacency matrix for a molecule.
get.atomic.desc.names   Get the names of the available atomic
                        descriptors
get.atoms               Get the atoms from a molecule or bond
get.bonds               Get the bonds from a molecule
get.connected.atom      Get the atom connected to an atom in a bond
get.connection.matrix   Get connection matrix for a molecule.
get.desc.categories     Get Descriptor Class Names
get.desc.names          Get Descriptor Class Names
get.element.types       Obtain the type of stereo element support for
                        atom.
get.exact.mass          Operations on molecules
get.fingerprint         Evaluate Fingerprints
get.formula             Get the formula object from a formula
                        character.
get.isotope.pattern.generator
                        Construct an isotope pattern generator.
get.isotope.pattern.similarity
                        Construct an isotope pattern similarity
                        calculator.
get.isotopes.pattern    Generate the isotope pattern.
get.mol2formula         Parser a molecule to formula object.
get.murcko.fragments    Molecule Fragmentation Methods
get.properties          Get All Property Values of a Molecule
get.property            Get the Value of a Molecule Property
get.smiles              Get the SMILES for a Molecule
get.smiles.parser       Get a SMILES Parser
get.stereo.types        Obtain the stereocenter type for atom.
get.stereocenters       Identify which atoms are stereocenters.
get.symbol              Operations on atoms
get.total.charge        Get the Total Charges for the Molecule
get.total.hydrogen.count
                        Get the Total Hydrogen Count for a Molecule
get.tpsa                Commonly Used Molecular Descriptors
hasNext                 Does This Iterator Have A Next Element
is.connected            Get the Largest Component in a Disconnected
                        Molecule
isvalid.formula         Validate a cdkFormula object.
load.molecules          Load Molecular Structures From Disk
matches                 Perform Substructure Searching & MCS Detection
parse.smiles            Parse a Vector of SMILES Strings
remove.hydrogens        Remove Hydrogens from a Molecule
remove.property         Remove A Property From a Molecule
set.charge.formula      Set the charge to a cdkFormula object.
set.property            Set A Property On A Molecule
smiles.flavors          Generate flag for customizing SMILES
                        generation.
view.molecule.2d        View and Copy 2D Structure Diagrams
view.table              View 2D Structures With Data
write.molecules         Write Molecules To Disk
