pomp-package	package
$,bsmcd.pomp-method	bsmc
$,kalmand.pomp-method	kalman
$,nlfd.pomp-method	nlf
$,pfilterd.pomp-method	pfilter
$,probe.matched.pomp-method	probe
$,probed.pomp-method	probe
$,traj.matched.pomp-method	traj_match
$-bsmcd.pomp	bsmc
$-kalmand.pomp	kalman
$-nlfd.pomp	nlf
$-pfilterd.pomp	pfilter
$-probe.matched.pomp	probe
$-probed.pomp	probe
$-traj.matched.pomp	traj_match
ABC	abc
abc	abc
abc,abc-method	abc
abc,ANY-method	abc
abc,missing-method	abc
abc,pomp-method	abc
abc,probed.pomp-method	abc
abc-abc	abc
abc-class	abc
abc-methods	abc
abc-pomp	abc
abc-probed.pomp	abc
abcList-class	abc
accumulator variables	pomp
as,kalmand.pomp-method	kalman
as,pfilterd.pomp-method	pfilter
as,pomp-method	pomp_methods
as,probed.pomp-method	probe
as.data.frame.kalmand.pomp	kalman
as.data.frame.pfilterd.pomp	pfilter
as.data.frame.pomp	pomp_methods
bake	bake
basic.probes	basic_probes
Bayesian sequential Monte Carlo	bsmc
bbs	sir
blowflies	blowflies
blowflies1	blowflies
blowflies2	blowflies
bsmc	bsmc
bsmc,ANY-method	bsmc
bsmc,missing-method	bsmc
bsmc,pomp-method	bsmc
bsmc-pomp	bsmc
bsmc2	bsmc
bsmc2,ANY-method	bsmc
bsmc2,missing-method	bsmc
bsmc2,pomp-method	bsmc
bsmc2-pomp	bsmc
bspline.basis	bsplines
c,abc-method	abc
c,abcList-method	abc
c,mif-method	mif
c,mif2d.pomp-method	mif2
c,mif2List-method	mif2
c,mifList-method	mif
c,pmcmc-method	pmcmc
c,pmcmcList-method	pmcmc
c-abc	abc
c-abcList	abc
c-mif	mif
c-mif2d.pomp	mif2
c-mif2List	mif2
c-mifList	mif
c-pmcmc	pmcmc
c-pmcmcList	pmcmc
coef,mif2List-method	mif2
coef,mifList-method	mif
coef,pomp-method	pomp_methods
coef-pomp	pomp_methods
coef.rec-mif2List	mif2
coef.rec-mifList	mif
coef<-	pomp_methods
coef<-,pomp-method	pomp_methods
coef<--pomp	pomp_methods
coerce,Csnippet,character-method	pomp
coerce,kalmand.pomp,data.frame-method	kalman
coerce,pfilterd.pomp,data.frame-method	pfilter
coerce,pomp,data.frame-method	pomp_methods
coerce,probed.pomp,data.frame-method	probe
cond.logLik	pfilter
cond.logLik,kalmand.pomp-method	kalman
cond.logLik,pfilterd.pomp-method	pfilter
cond.logLik-kalmand.pomp	kalman
cond.logLik-pfilterd.pomp	pfilter
continue	mif2
continue,abc-method	abc
continue,ANY-method	mif2
continue,mif-method	mif
continue,mif2d.pomp-method	mif2
continue,missing-method	mif2
continue,pmcmc-method	pmcmc
continue-abc	abc
continue-mif	mif
continue-mif2d.pomp	mif2
continue-pmcmc	pmcmc
conv.rec	mif
conv.rec,abc-method	abc
conv.rec,abcList-method	abc
conv.rec,mif-method	mif
conv.rec,mif2d.pomp-method	mif2
conv.rec,mif2List-method	mif2
conv.rec,mifList-method	mif
conv.rec,pmcmc-method	pmcmc
conv.rec,pmcmcList-method	pmcmc
conv.rec-abc	abc
conv.rec-abcList	abc
conv.rec-mif	mif
conv.rec-mif2d.pomp	mif2
conv.rec-mif2List	mif2
conv.rec-mifList	mif
conv.rec-pmcmc	pmcmc
conv.rec-pmcmcList	pmcmc
covmat	abc
covmat,abc-method	abc
covmat,abcList-method	abc
covmat,pmcmc-method	pmcmc
covmat,pmcmcList-method	pmcmc
covmat-abc	abc
covmat-abcList	abc
covmat-pmcmc	pmcmc
covmat-pmcmcList	pmcmc
Csnippet	pomp
Csnippet-class	pomp
dacca	dacca
deulermultinom	eulermultinom
discrete.time.sim	pomp
dmeasure	lowlevel
dmeasure,pomp-method	lowlevel
dmeasure-pomp	lowlevel
dprior	lowlevel
dprior,pomp-method	lowlevel
dprior-pomp	lowlevel
dprocess	lowlevel
dprocess,pomp-method	lowlevel
dprocess-pomp	lowlevel
eakf	kalman
eakf,ANY-method	kalman
eakf,missing-method	kalman
eakf,pomp-method	kalman
eakf-pomp	kalman
eff.sample.size	pfilter
eff.sample.size,pfilterd.pomp-method	pfilter
eff.sample.size-pfilterd.pomp	pfilter
enkf	kalman
enkf,ANY-method	kalman
enkf,missing-method	kalman
enkf,pomp-method	kalman
enkf-pomp	kalman
ensembe Kalman filter	kalman
ensemble adjustment Kalman filter	kalman
euler.sim	pomp
euler.sir	sir
eulermultinom	eulermultinom
ewcitmeas	measles
ewmeas	measles
Example pomp models	example
filter.mean	pfilter
filter.mean,kalmand.pomp-method	kalman
filter.mean,pfilterd.pomp-method	pfilter
filter.mean-kalmand.pomp	kalman
filter.mean-pfilterd.pomp	pfilter
filter.traj	pfilter
filter.traj,pfilterd.pomp-method	pfilter
filter.traj,pmcmc-method	pmcmc
filter.traj,pmcmcList-method	pmcmc
filter.traj-pfilterd.pomp	pfilter
filter.traj-pmcmc	pmcmc
filter.traj-pmcmcList	pmcmc
freeze	bake
gillespie.hl.sim	pomp
gillespie.sim	pomp
gillespie.sir	sir
gompertz	gompertz
hitch	hitch
init.state	lowlevel
init.state,pomp-method	lowlevel
init.state-pomp	lowlevel
ivp	mif2
kalmand.pomp	kalman
kalmand.pomp-class	kalman
logLik,kalmand.pomp-method	kalman
logLik,nlfd.pomp-method	nlf
logLik,pfilterd.pomp-method	pfilter
logLik,pmcmc-method	pmcmc
logLik,pmcmcList-method	pmcmc
logLik,probed.pomp-method	probe
logLik,traj.matched.pomp-method	traj_match
logLik-kalmand.pomp	kalman
logLik-nlfd.pomp	nlf
logLik-pfilterd.pomp	pfilter
logLik-pmcmc	pmcmc
logLik-pmcmcList	pmcmc
logLik-probed.pomp	probe
logLik-traj.matched.pomp	traj_match
logmeanexp	logmeanexp
LondonYorke	measles
map	pomp
MCMC proposal distributions	proposals
MCMC proposal functions	proposals
mif	mif
mif,ANY-method	mif
mif,mif-method	mif
mif,missing-method	mif
mif,pfilterd.pomp-method	mif
mif,pomp-method	mif
mif-class	mif
mif-methods	mif
mif-mif	mif
mif-pfilterd.pomp	mif
mif-pomp	mif
mif2	mif2
mif2,ANY-method	mif2
mif2,mif2d.pomp-method	mif2
mif2,missing-method	mif2
mif2,pfilterd.pomp-method	mif2
mif2,pomp-method	mif2
mif2-mif2d.pomp	mif2
mif2-pfilterd.pomp	mif2
mif2-pomp	mif2
mif2d.pomp-class	mif2
mif2d.pomp-methods	mif2
mif2List-class	mif2
mifList-class	mif
mvn.diag.rw	proposals
mvn.rw	proposals
mvn.rw.adaptive	proposals
nlf	nlf
nlf,ANY-method	nlf
nlf,missing-method	nlf
nlf,nlfd.pomp-method	nlf
nlf,pomp-method	nlf
nlf-nlfd.pomp	nlf
nlf-pomp	nlf
nlfd.pomp-class	nlf
Nonlinear forecasting	nlf
obs	pomp_methods
obs,pomp-method	pomp_methods
obs-pomp	pomp_methods
onestep.dens	pomp
onestep.sim	pomp
ou2	ou2
parmat	parmat
particle filter	pfilter
partrans	pomp_methods
partrans,pomp-method	pomp_methods
partrans-pomp	pomp_methods
periodic.bspline.basis	bsplines
pfilter	pfilter
pfilter,ANY-method	pfilter
pfilter,missing-method	pfilter
pfilter,pfilterd.pomp-method	pfilter
pfilter,pomp-method	pfilter
pfilter-pfilterd.pomp	pfilter
pfilter-pomp	pfilter
pfilterd.pomp	pfilter
pfilterd.pomp-class	pfilter
plot,abc-method	abc
plot,abcList-method	abc
plot,bsmcd.pomp-method	bsmc
plot,mif-method	mif
plot,mif2d.pomp-method	mif2
plot,mif2List-method	mif2
plot,mifList-method	mif
plot,pmcmc-method	pmcmc
plot,pmcmcList-method	pmcmc
plot,pomp-method	pomp_methods
plot,probe.matched.pomp-method	probe
plot,probed.pomp-method	probe
plot,spect.matched.pomp-method	probe
plot,spect.pomp-method	probe
plot-abc	abc
plot-abcList	abc
plot-bsmcd.pomp	bsmc
plot-mif	mif
plot-mif2d.pomp	mif2
plot-mif2List	mif2
plot-mifList	mif
plot-pmcmc	pmcmc
plot-pmcmcList	pmcmc
plot-pomp	pomp_methods
plot-probe.matched.pomp	probe
plot-probed.pomp	probe
plot-spect.pomp	probe
plug-ins	pomp
pmcmc	pmcmc
pmcmc,ANY-method	pmcmc
pmcmc,missing-method	pmcmc
pmcmc,pfilterd.pomp-method	pmcmc
pmcmc,pmcmc-method	pmcmc
pmcmc,pomp-method	pmcmc
pmcmc-class	pmcmc
pmcmc-methods	pmcmc
pmcmc-pfilterd.pomp	pmcmc
pmcmc-pmcmc	pmcmc
pmcmc-pomp	pmcmc
pmcmcList-class	pmcmc
pomp	pomp
pomp constructor	pomp
pomp low-level interface	lowlevel
pomp methods	pomp_methods
pomp package	package
POMP simulation	simulate_pomp
pomp-class	pomp
pomp-methods	pomp_methods
pomp.fun	pomp_fun
pomp.fun,character-method	pomp_fun
pomp.fun,Csnippet-method	pomp_fun
pomp.fun,function-method	pomp_fun
pomp.fun,missing-method	pomp_fun
pomp.fun,pomp.fun-method	pomp_fun
pomp.fun-class	pomp_fun
pomp.fun-methods	pomp_fun
pompExample	example
pompLoad	lowlevel
pompLoad,pomp-method	lowlevel
pompLoad-pomp	lowlevel
pompUnload	lowlevel
pompUnload,pomp-method	lowlevel
pompUnload-pomp	lowlevel
Power spectrum computation and matching	spect
power spectrum computation and matching	spect
pred.mean	pfilter
pred.mean,kalmand.pomp-method	kalman
pred.mean,pfilterd.pomp-method	pfilter
pred.mean-kalmand.pomp	kalman
pred.mean-pfilterd.pomp	pfilter
pred.var	pfilter
pred.var,pfilterd.pomp-method	pfilter
pred.var-pfilterd.pomp	pfilter
print,listies-method	lowlevel
print,pomp.fun-method	pomp_fun
print,unshowable-method	lowlevel
print-pomp.fun	pomp_fun
probe	probe
Probe functions	basic_probes
probe functions	basic_probes
probe,ANY-method	probe
probe,missing-method	probe
probe,pomp-method	probe
probe,probed.pomp-method	probe
probe-pomp	probe
probe-probed.pomp	probe
probe.acf	basic_probes
probe.ccf	basic_probes
probe.marginal	basic_probes
probe.match	probe
probe.match,ANY-method	probe
probe.match,missing-method	probe
probe.match,pomp-method	probe
probe.match,probe.matched.pomp-method	probe
probe.match,probed.pomp-method	probe
probe.match-pomp	probe
probe.match-probe.matched.pomp	probe
probe.match-probed.pomp	probe
probe.match.objfun	probe
probe.match.objfun,ANY-method	probe
probe.match.objfun,missing-method	probe
probe.match.objfun,pomp-method	probe
probe.match.objfun,probed.pomp-method	probe
probe.match.objfun-pomp	probe
probe.match.objfun-probed.pomp	probe
probe.matched.pomp-class	probe
probe.matched.pomp-methods	probe
probe.mean	basic_probes
probe.median	basic_probes
probe.nlar	basic_probes
probe.period	basic_probes
probe.quantile	basic_probes
probe.sd	basic_probes
probe.var	basic_probes
probed.pomp-class	probe
probed.pomp-methods	probe
Probes and synthetic likelihood	probe
process model plug-ins	pomp
profileDesign	design
reulermultinom	eulermultinom
rgammawn	eulermultinom
ricker	ricker
rmeasure	lowlevel
rmeasure,pomp-method	lowlevel
rmeasure-pomp	lowlevel
rprior	lowlevel
rprior,pomp-method	lowlevel
rprior-pomp	lowlevel
rprocess	lowlevel
rprocess,pomp-method	lowlevel
rprocess-pomp	lowlevel
rw.sd	mif2
rw2	rw2
sannbox	sannbox
sequential Monte Carlo	pfilter
show,listies-method	lowlevel
show,pomp.fun-method	pomp_fun
show,unshowable-method	lowlevel
show-pomp.fun	pomp_fun
simulate,ANY-method	simulate_pomp
simulate,missing-method	simulate_pomp
simulate,pomp-method	simulate_pomp
simulate-pomp	simulate_pomp
Simulated annealing	sannbox
skeleton	lowlevel
skeleton,pomp-method	lowlevel
skeleton-pomp	lowlevel
sliceDesign	design
SMC	pfilter
sobolDesign	design
solibs<-	lowlevel
solibs<-,pomp-method	lowlevel
spect	spect
spect,ANY-method	spect
spect,missing-method	spect
spect,pomp-method	spect
spect,spect.pomp-method	spect
spect-pomp	spect
spect-spect.pomp	spect
spect.match	spect
spect.match,ANY-method	spect
spect.match,missing-method	spect
spect.match,pomp-method	spect
spect.match,spect.matched.pomp-method	spect
spect.match,spect.pomp-method	spect
spect.match-pomp	spect
spect.match-spect.matched.pomp	spect
spect.match-spect.pomp	spect
spect.matched.pomp-class	spect
spect.matched.pomp-methods	probe
spect.pomp-class	spect
spect.pomp-methods	probe
spy	pomp_methods
spy,pomp-method	pomp_methods
spy-pomp	pomp_methods
states	pomp_methods
states,pomp-method	pomp_methods
states-pomp	pomp_methods
stew	bake
summary,probe.matched.pomp-method	probe
summary,probed.pomp-method	probe
summary,spect.matched.pomp-method	probe
summary,spect.pomp-method	probe
summary,traj.matched.pomp-method	traj_match
summary-probe.matched.pomp	probe
summary-probed.pomp	probe
summary-spect.matched.pomp	probe
summary-spect.pomp	probe
summary-traj.matched.pomp	traj_match
The pomp package	package
time,pomp-method	pomp_methods
time-pomp	pomp_methods
time<-	pomp_methods
time<-,pomp-method	pomp_methods
time<--pomp	pomp_methods
timezero	pomp_methods
timezero,pomp-method	pomp_methods
timezero-pomp	pomp_methods
timezero<-	pomp_methods
timezero<-,pomp-method	pomp_methods
timezero<--pomp	pomp_methods
traj.match	traj_match
traj.match,ANY-method	traj_match
traj.match,missing-method	traj_match
traj.match,pomp-method	traj_match
traj.match,traj.matched.pomp-method	traj_match
traj.match-pomp	traj_match
traj.match-traj.matched.pomp	traj_match
traj.match.objfun	traj_match
traj.match.objfun,ANY-method	traj_match
traj.match.objfun,missing-method	traj_match
traj.match.objfun,pomp-method	traj_match
traj.match.objfun-pomp	traj_match
traj.matched.pomp-class	traj_match
trajectory	lowlevel
Trajectory matching	traj_match
trajectory,pomp-method	lowlevel
trajectory-pomp	lowlevel
values	probe
values,probe.matched.pomp-method	probe
values,probed.pomp-method	probe
values-probe.matched.pomp	probe
values-probed.pomp	probe
vectorfield	pomp
window,pomp-method	pomp_methods
window-pomp	pomp_methods
[,abcList-method	abc
[,mif2List-method	mif2
[,mifList-method	mif
[,pmcmcList-method	pmcmc
[-abcList	abc
[-mif2List	mif2
[-mifList	mif
[-pmcmcList	pmcmc
