addAei                  Add allele specific expression data to list
addAntisense            Add antisense transcript information to list
addCisEqtl              Add cis eQTL data to list
addDnase                Add data from Maurano et. al. Nat Genet. 2015
                        regarding allele specific DNAse
                        hypersensitivty.
addEnst                 Add transcript information to list
addExpression           Add RNAsequencing expression data list
addGo                   Add gene ontology to list
addGrasp                Add GWAS data from GRASP to list
addGwasCatalog          Add GWAS data from NHGRI-EBI GWAS Catalog to
                        list
addLoc                  Add gene location information to list
addPtv                  Add results from protein truncating variant
                        algorithm made available by GTEx
addPubmed               Adds number of titles from Pubmed to list
addSqtlAltrans          Add results from Altrans splicingQTL algorithm
                        to list
addSqtlSeek             Add results from SqtlSeek splicingQTL algorithm
                        to list
addTransEqtl            Add trans eQTL data to list
buildFromEnsgs          Build empty list using ENSG gene ids.
buildFromNames          Build empty list using gene names.
buildFromRegion         Build empty list using genomic region.
exMgl                   exMgl
exampleMgl              exampleMgl
fixNames                Fix genes with missing names
fixSnpIds               Convert chr_pos to rs id
listElements            Returns names of elements that are filled in
listSeparate            Returns an individual element for each gene
makeAeiPlot             Plot GTEx AEI ratios
makeCoXpGene            Tests pairwise co-expression for normalized
                        expression data
makeCoXpTranscript      Tests pairwise co-expression between user
                        defined transcripts in specified tissues
makeDnaseSig            Filter Dnase (Maurano) Results
makeGo                  Returns a list with Gene Ontology data
makeGoSearch            Returns gene names with a given GO term
makeMultiEqtl           Returns SNPs identified as cis-eQTLs for more
                        than one gene
makeOverlap             Returns SNPs that appear in two user-defined
                        groups for a given gene
makeOverlapTable        Returns information for SNPs that appear in two
                        user-defined groups for a given gene
makePhenotypeSearch     Returns gene names with a given phenotype
makePhenotypes          Make list of GWAS-based traits
makeSnpSearch           Returns gene names with a given SNP
makeSnps                Make SNP list
makeSummary             Returns a summary table of the number of eQTL
                        and GWAS SNPs for each gene
missNames               Idenify genes with missing names
