metacoder-package	metacoder
%>%	grapes-greater-than-grapes
.onAttach	dot-onAttach
add_alpha	add_alpha
ambiguous_patterns	ambiguous_patterns
apply_color_scale	apply_color_scale
as_phyloseq	as_phyloseq
calc_group_mean	calc_group_mean
calc_group_median	calc_group_median
calc_group_rsd	calc_group_rsd
calc_group_stat	calc_group_stat
calc_n_samples	calc_n_samples
calc_obs_props	calc_obs_props
calc_prop_samples	calc_prop_samples
calc_taxon_abund	calc_taxon_abund
can_be_num	can_be_num
check_element_length	check_element_length
check_for_pkg	check_for_pkg
check_option_groups	check_option_groups
compare_groups	compare_groups
complement	complement
contains	contains
convert_base	convert_base
counts_to_presence	counts_to_presence
diverging_palette	diverging_palette
DNAbin_to_char	DNAbin_to_char
do_calc_on_num_cols	do_calc_on_num_cols
edge_list_depth	edge_list_depth
ends_with	ends_with
everything	everything
fasta_headers	fasta_headers
filter_ambiguous_taxa	filter_ambiguous_taxa
get_class_from_el	get_class_from_el
get_edge_children	get_edge_children
get_edge_parents	get_edge_parents
get_expected_data	get_expected_data
get_node_children	get_node_children
get_numerics	get_numerics
get_numeric_cols	get_numeric_cols
get_optimal_range	get_optimal_range
get_taxmap_cols	get_taxmap_cols
get_taxmap_data	get_taxmap_data
get_taxmap_other_cols	get_taxmap_other_cols
get_taxmap_table	get_taxmap_table
get_taxonomy_levels	get_taxonomy_levels
heat_tree	heat_tree
heat_tree.default	heat_tree
heat_tree.Taxmap	heat_tree
heat_tree_matrix	heat_tree_matrix
hmp_otus	hmp_otus
hmp_samples	hmp_samples
inter_circle_gap	inter_circle_gap
inverse	inverse
is_ambiguous	is_ambiguous
label_bounds	label_bounds
layout_functions	layout_functions
limited_print	limited_print
line_coords	line_coords
look_for_na	look_for_na
make_dada2_asv_table	make_dada2_asv_table
make_dada2_tax_table	make_dada2_tax_table
make_fasta_with_u_replaced	make_fasta_with_u_replaced
make_plot_legend	make_plot_legend
map_unique	map_unique
matches	matches
metacoder	metacoder
molten_dist	molten_dist
my_print	my_print
ncbi_sequence	ncbi_sequence
ncbi_taxon_sample	ncbi_taxon_sample
num_range	num_range
one_of	one_of
parse_dada2	parse_dada2
parse_edge_list	parse_edge_list
parse_greengenes	parse_greengenes
parse_mothur_taxonomy	parse_mothur_taxonomy
parse_mothur_tax_summary	parse_mothur_tax_summary
parse_newick	parse_newick
parse_phylo	parse_phylo
parse_phyloseq	parse_phyloseq
parse_primersearch	parse_primersearch
parse_qiime_biom	parse_qiime_biom
parse_rdp	parse_rdp
parse_seq_input	parse_seq_input
parse_silva_fasta	parse_silva_fasta
parse_summary_seqs	parse_summary_seqs
parse_ubiome	parse_ubiome
parse_unite_general	parse_unite_general
polygon_coords	polygon_coords
primersearch	primersearch
primersearch_is_installed	primersearch_is_installed
primersearch_raw	primersearch_raw
qualitative_palette	qualitative_palette
quantative_palette	quantative_palette
rarefy_obs	rarefy_obs
read_fasta	read_fasta
read_lines_apply	read_lines_apply
repo_url	repo_url
rescale	rescale
reverse	reverse
rev_comp	rev_comp
run_primersearch	run_primersearch
scale_bar_coords	scale_bar_coords
select_labels	select_labels
split_by_level	split_by_level
starts_with	starts_with
startup_msg	startup_msg
text_grob_length	text_grob_length
transform_data	transform_data
unique_mapping	unique_mapping
verify_color_range	verify_color_range
verify_label_count	verify_label_count
verify_size	verify_size
verify_size_range	verify_size_range
verify_taxmap	verify_taxmap
verify_trans	verify_trans
write_greengenes	write_greengenes
write_mothur_taxonomy	write_mothur_taxonomy
write_rdp	write_rdp
write_silva_fasta	write_silva_fasta
write_unite_general	write_unite_general
zero_low_counts	zero_low_counts
