Package: lilikoi
Title: Metabolomics Personalized Pathway Analysis Tool
Version: 0.1.0
Authors@R: c(
 person("Fadhl", "Alakwaa", email = "falakwaa@hawaii.edu", role = c("aut", "cre")),
 person("Sijia", "Huang", email = "scarlettcanny@gmail.com", role = c( "aut")))
Description: Computes the pathway deregulation score for a given set of metabolites, selects the pathways with the highest mutual information and then uses them to build a classifier. F. Alakwaa, S. Huang, and L. Garmire (2018) <doi:10.1101/283408>.
Imports: caret, corrplot, devtools, dplyr, e1071, gbm, ggplot2, glmnet,
        hash, Hmisc, infotheo, Matrix, pamr, R.oo, princurve, pROC,
        randomForest, reshape2, RWeka, stringr
Depends: R (>= 3.4.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: https://github.com/lanagarmire/lilikoi
BugReports: https://github.com/lanagarmire/lilikoi/issues
RoxygenNote: 6.0.1.9000
Suggests: testthat
NeedsCompilation: no
Packaged: 2018-07-24 22:16:04 UTC; byunits
Author: Fadhl Alakwaa [aut, cre],
  Sijia Huang [aut]
Maintainer: Fadhl Alakwaa <falakwaa@hawaii.edu>
Repository: CRAN
Date/Publication: 2018-07-30 11:10:03 UTC
Built: R 3.4.4; ; 2019-04-25 22:20:25 UTC; windows
