$-methods               ~~ Methods for Function '$' ~~
enve.GrowthCurve-class
                        enve.GrowthCurve S4 class
enve.RecPlot2-class     enve.RecPlot2 S4 class
enve.RecPlot2.Peak-class
                        enve.RecPlot2.Peak S4 class
enve.TRIBS-class        enve.TRIBS S4 class
enve.TRIBS.merge        enve TRIBS merge
enve.TRIBStest-class    enve.TRIBStest S4 class
enve.__prune.iter       enve prune iter
enve.__prune.reduce     enve prune reduce
enve.__tribs            enve tribs
enve.barplot            enve barplot
enve.cliopts            enve cliopts
enve.col.alpha          enve col alpha
enve.col2alpha          enve col2alpha
enve.df2dist            enve df2dist
enve.df2dist.group      enve df2dist group
enve.df2dist.list       enve df2dist list
enve.growthcurve        enve growthcurve
enve.prune.dist         enve prune dist
enve.recplot            enve recplot
enve.recplot2           enve recplot2
enve.recplot2.ANIr      enve recplot2 ANIr
enve.recplot2.__counts
                        enve recplot2 counts
enve.recplot2.__peakHist
                        enve recplot2 peakHist
enve.recplot2.__whichClosestPeak
                        enve recplot2 whichClosestPeak
enve.recplot2.changeCutoff
                        enve recplot2 changeCutoff
enve.recplot2.compareIdentities
                        enve recplot2 compareIdentities
enve.recplot2.coordinates
                        enve recplot2 coordinates
enve.recplot2.corePeak
                        enve recplot2 corePeak
enve.recplot2.extractWindows
                        enve recplot2 extractWindows
enve.recplot2.findPeaks
                        enve recplot2 findPeaks
enve.recplot2.findPeaks.__em_e
                        enve recplot2 findPeaks em e
enve.recplot2.findPeaks.__em_m
                        enve recplot2 findPeaks em m
enve.recplot2.findPeaks.__emauto_one
                        enve recplot2 findPeaks emauto one
enve.recplot2.findPeaks.__mow_one
                        enve recplot2 findPeaks mow one
enve.recplot2.findPeaks.__mower
                        enve recplot2 findPeaks mower
enve.recplot2.findPeaks.em
                        enve recplot2 findPeaks em
enve.recplot2.findPeaks.emauto
                        enve recplot2 findPeaks emauto
enve.recplot2.findPeaks.mower
                        enve recplot2 findPeaks mower
enve.recplot2.seqdepth
                        enve recplot2 seqdepth
enve.recplot2.windowDepthThreshold
                        enve recplot2 windowDepthThreshold
enve.tribs              enve tribs
enve.tribs.test         enve tribs test
enve.truncate           enve truncate
enveomics.R-package     Various Utilities for Microbial Genomics and
                        Metagenomics
growth.curves           Bacterial growth curves for three Escherichia
                        coli mutants
phyla.counts            Counts of microbial phyla in four sites
plot.enve.GrowthCurve   plot enve GrowthCurve
plot.enve.RecPlot2      plot enve RecPlot2
plot.enve.TRIBS         plot enve TRIBS
plot.enve.TRIBStest     plot enve TRIBStest
summary.enve.GrowthCurve
                        summary enve GrowthCurve
summary.enve.TRIBS      summary enve TRIBS
summary.enve.TRIBStest
                        summary enve TRIBStest
