AnomAuth                AnomAuth
Kalman                  Kalman
Oscillating             Oscillating
ctCI                    ctCI Computes confidence intervals on specified
                        parameters / matrices for already fitted ctsem
                        fit object.
ctCheckFit              Check absolute fit of ctFit or ctStanFit
                        object.
ctCollapse              ctCollapse Easily collapse an array margin
                        using a specified function.
ctCompareExpected       ctCompareExpected Compares model implied to
                        observed means and covariances for panel data
                        fit with ctsem.
ctDeintervalise         ctDeintervalise
ctDensity               ctDensity
ctDiscretePars          ctDiscretePars
ctDiscretiseData        Discretise long format continuous time (ctsem)
                        data to specific timestep.
ctExample1              ctExample1
ctExample1TIpred        ctExample1TIpred
ctExample2              ctExample2
ctExample2level         ctExample2level
ctExample3              ctExample3
ctExample4              ctExample4
ctFit                   Fit a ctsem object
ctGenerate              ctGenerate
ctGenerateFromFit       Generates data according to the model estimated
                        in a ctsemFit object.#'
ctIndplot               ctIndplot
ctIntervalise           Converts absolute times to intervals for wide
                        format ctsem panel data
ctKalman                ctKalman
ctKalmanPlot            ctKalmanPlot
ctLongToWide            ctLongToWide Restructures time series / panel
                        data from long format to wide format for ctsem
                        analysis
ctModel                 Define a ctsem model
ctModelFromFit          Extract a ctsem model structure with parameter
                        values from a ctsem fit object.
ctMultigroupFit         Fits a multiple group continuous time model.
ctPlot                  ctPlot
ctPlotArray             Plots three dimensional y values for quantile
                        plots
ctPoly                  Plots uncertainty bands with shading
ctPostPredict           Posterior predictive type check for ctsemFit.
ctRefineTo              ctRefineTo
ctStanContinuousPars    ctStanContinuousPars
ctStanDiscretePars      ctStanDiscretePars
ctStanDiscreteParsPlot
                        ctStanDiscreteParsPlot
ctStanFit               ctStanFit
ctStanGenerateData      Add a $generated object to ctstanfit object,
                        with random data generated from posterior of
                        ctstanfit object
ctStanKalman            Get Kalman filter estimates from a ctStanFit
                        object
ctStanModel             Convert a frequentist (omx) ctsem model
                        specification to Bayesian (Stan).
ctStanParMatrices       Returns population system matrices from a
                        ctStanFit object, and vector of values for free
                        parameters.
ctStanParnames          ctStanParnames
ctStanPlotPost          ctStanPlotPost
ctStanPostPredict       Compares model implied density and values to
                        observed, for a ctStanFit object.
ctStanTIpredMarginal    Plot marginal relationships between covariates
                        and parameters for a ctStanFit object.
ctStanTIpredeffects     Get time independent predictor effect estimates
ctStanUpdModel          Update an already compiled and fit ctStanFit
                        object
ctWideNames             ctWideNames sets default column names for wide
                        ctsem datasets. Primarily intended for internal
                        ctsem usage.
ctWideToLong            ctWideToLong Convert ctsem wide to long format
ctsem                   ctsem
ctstantestdat           ctstantestdat
ctstantestfit           ctstantestfit
datastructure           datastructure
extract                 Extract samples from a ctStanFit object
inv_logit               Inverse logit
isdiag                  Diagnostics for ctsem importance sampling
longexample             longexample
msquare                 Right multiply a matrix by its transpose.
optimstan               Optimize / importance sample a stan or ctStan
                        model.
plot.ctStanFit          plot.ctStanFit
plot.ctStanModel        Prior plotting
plot.ctsemFit           Plotting function for object class ctsemFit
plot.ctsemFitMeasure    Misspecification plot using ctCheckFit output
plot.ctsemMultigroupFit
                        Plot function for ctsemMultigroupFit object
sdpcor2cov              sdcor2cov
stanWplot               Runs stan, and plots sampling information while
                        sampling.
stan_checkdivergences   Analyse divergences in a stanfit object
stan_confidenceRegion   Extract functions of multiple variables from a
                        stanfit object
stan_postcalc           Compute functions of matrices from samples of a
                        stanfit object
stan_unconstrainsamples
                        Convert samples from a stanfit object to the
                        unconstrained scale
summary.ctStanFit       summary.ctStanFit
summary.ctsemFit        Summary function for ctsemFit object
summary.ctsemMultigroupFit
                        Summary function for ctsemMultigroupFit object
