# Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

## Documentation for package ‘cRegulome’ version 0.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cRegulome-package | 'cRegulome' package
cmicroRNA | Construct cmicroRNA object
cor_hist | A histogram of the correlations of microRNA or tf sets
cor_igraph | Make an igraph object
cor_joy | A joy plot of correlation of microRNA or tf sets
cor_plot | Plot method for cmicroRNA and cTF objects
cor_prep | Prepare correlation data for plotting
cor_tidy | Tidy cmicroRNA and cTF objects
cor_upset | 'upset' plot of microRNA or tf sets
cor_venn_diagram | Venn Diagram of microRNA or transcription factor correlated features
cRegulome | 'cRegulome' package
cTF | Construct cTF object
get_db | Get cRegulome.db file
get_mir | Get microRNA correlations from cRegulome.db
get_tf | Get transcription factor correlations from cRegulome.db
stat_collect | Collect data from SQLite database
stat_collect_targets | Collect target features from SQLite database
stat_make | Make A SQL statement
stat_make_targets | Make A SQL statement to extract target features