bitrugs                 Bayesian Inference of Transmission Routes Using
                        Genome Sequences
hospitaldata            Example hospital data
mcmcoutput              Example MCMC output
plot_transnetwork       Plot transmission networks
simulate_data           Nosocomial transmission data simulation
simulate_data_dates     Nosocomial transmission data simulation with
                        fixed dates.
traceplots              Create MCMC trace plots
translinks              Calculate tree distance
transmission_analysis   Estimate transmission dynamics and parameters
