WhopGenome-package	WhopPkg-package
bgzf_compress	bgzf_compress
fai_build	fai_build
fai_close	fai_close
fai_open	fai_open
fai_query2	fai_query2
fai_query3	fai_query2
fai_query4	fai_query4
fai_query5	fai_query4
fai_reopen	fai_reopen
read_snp_diplo_bial_int_altpresence	VCF_snpmat_diplo_bial_geno_filtered
read_snp_diplo_bial_int_nuclcodes	VCF_snpmat_diplo_bial_geno_filtered
read_snp_diplo_bial_str_01	VCF_snpmat_diplo_bial_geno_filtered
read_snp_diplo_bial_str_allelechars	VCF_snpmat_diplo_bial_geno_filtered
read_snp_diplo_bial_str_nuclcodes	VCF_snpmat_diplo_bial_geno_filtered
tabix_build	tabix_build
tabix_close	tabix_close
tabix_getregion	tabix_getregion
tabix_open	tabix_open
tabix_read	tabix_read
tabix_readraw	tabix_read
tabix_reopen	tabix_reopen
tabix_restartregion	tabix_restartregion
tabix_setregion	tabix_setregion
vcf_addfilter	vcf_addfilter
vcf_buildindex	vcf_buildindex
vcf_clearfilters	vcf_clearfilters
vcf_close	vcf_close
vcf_countBiallelicSNPs	vcf_countSNPs
vcf_countSNPs	vcf_countSNPs
vcf_describefilters	vcf_describefilters
vcf_eor	vcf_eor
vcf_getAlt	vcf_getChrom
vcf_getChrom	vcf_getChrom
vcf_getcontignames	vcf_getcontignames
vcf_getfieldnames	vcf_getfieldnames
vcf_getFilter	vcf_getChrom
vcf_getFormat	vcf_getChrom
vcf_getheaderline	vcf_getheaderline
vcf_getID	vcf_getChrom
vcf_getInfo	vcf_getChrom
vcf_getInfoField	vcf_getChrom
vcf_getnumcontigs	vcf_getnumcontigs
vcf_getPos	vcf_getChrom
vcf_getQual	vcf_getChrom
vcf_getRef	vcf_getChrom
vcf_getregion	vcf_getregion
vcf_getSample	vcf_getChrom
vcf_getsamples	vcf_selectsamples
vcf_getselectedsamples	vcf_selectsamples
vcf_isINDEL	vcf_isINDEL
vcf_isSNP	vcf_isSNP
vcf_open	vcf_open
vcf_parseNextLine	vcf_parseNextSNP
vcf_parseNextSNP	vcf_parseNextSNP
VCF_readIntoCodeMatrix	VCF_snpmat_diplo_bial_geno_filtered
vcf_readLineDF	vcf_readLineDF
vcf_readLineRaw	vcf_readLineRaw
vcf_readLineRawFiltered	vcf_readLineRaw
vcf_readLineVec	vcf_readLineVec
vcf_readLineVecFiltered	vcf_readLineVec
VCF_read_snp_diplo_bial_int_altpresence	VCF_read_snp_diplo_bial_int_altpresence
VCF_read_snp_diplo_bial_int_nuclcodes	VCF_read_snp_diplo_bial_int_altpresence
VCF_read_snp_diplo_bial_str_01	VCF_read_snp_diplo_bial_int_altpresence
VCF_read_snp_diplo_bial_str_allelechars	VCF_read_snp_diplo_bial_int_altpresence
VCF_read_snp_diplo_bial_str_nuclcodes	VCF_read_snp_diplo_bial_int_altpresence
vcf_reopen	vcf_reopen
vcf_restartregion	vcf_restartregion
vcf_rule.disable	vcf_rule.disable
vcf_rule.enable	vcf_rule.disable
vcf_rule.setaction	vcf_rule.setaction
vcf_rule.setcolumn	vcf_rule.setcolumn
vcf_rule.setcomparison	vcf_rule.setcomparison
vcf_rule.setfield	vcf_rule.setfield
vcf_rule.setrefvalues	vcf_rule.setrefvalues
vcf_selectsamples	vcf_selectsamples
vcf_setregion	vcf_setregion
VCF_snpmat_anyplo_anyal_nucodes_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_anyplo_anyal_nucodes_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_anyplo_bial_nucodes_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_anyplo_bial_nucodes_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_geno_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_geno_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_hasalt_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_hasalt_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_ishet_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_ishet_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_nucodes_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_anyal_nucodes_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_geno_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_geno_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_hasalt_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_hasalt_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_ishet_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_ishet_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_nucodes_filtered	VCF_snpmat_diplo_bial_geno_filtered
VCF_snpmat_diplo_bial_nucodes_unfiltered	VCF_snpmat_diplo_bial_geno_filtered
vcf_valid	vcf_valid
whop.eg.abbrevForOrganism	whop.eg.abbrevForOrganism
whop.eg.chromosome	whop.eg.chromosome
whop.eg.eg_lookup	whop.eg.eg_lookup
whop.eg.eg_lookupAll	whop.eg.eg_lookupAll
whop.eg.eg_lookupSingle	whop.eg.eg_lookupSingle
whop.eg.eg_RevLookup	whop.eg.eg_RevLookup
whop.eg.enzyme	whop.eg.enzyme
whop.eg.fromAccnum	whop.eg.fromAccnum
whop.eg.fromAlias	whop.eg.fromAlias
whop.eg.fromEnsembl	whop.eg.fromEnsembl
whop.eg.fromEnsemblProt	whop.eg.fromEnsemblProt
whop.eg.fromEnsemblTrans	whop.eg.fromEnsemblTrans
whop.eg.fromEnzyme	whop.eg.fromEnzyme
whop.eg.fromGO	whop.eg.fromGO
whop.eg.fromGO2AllEgs	whop.eg.fromGO2AllEgs
whop.eg.fromOmim	whop.eg.fromOmim
whop.eg.fromPath	whop.eg.fromPath
whop.eg.fromPmid	whop.eg.fromPmid
whop.eg.fromRefseq	whop.eg.fromRefseq
whop.eg.fromUnigene	whop.eg.fromUnigene
whop.eg.fromUniprot	whop.eg.fromUniprot
whop.eg.genename	whop.eg.genename
whop.eg.goIds	whop.eg.goIds
whop.eg.installdb	whop.eg.installdb
whop.eg.keggpathways	whop.eg.keggpathways
whop.eg.load_orgdb	whop.eg.load_orgdb
whop.eg.Organism	whop.eg.Organism
whop.eg.orgdb_loaded	whop.eg.orgdb_loaded
whop.eg.region	whop.eg.region
whop.eg.selectOrganism	whop.eg.selectOrganism
whop.eg.toAccnum	whop.eg.toAccnum
whop.eg.toAlias	whop.eg.toAlias
whop.eg.toEnsembl	whop.eg.toEnsembl
whop.eg.toEnsemblProt	whop.eg.toEnsemblProt
whop.eg.toEnsemblTrans	whop.eg.toEnsemblTrans
whop.eg.toEnzyme	whop.eg.toEnzyme
whop.eg.toGO	whop.eg.toGO
whop.eg.toOmim	whop.eg.toOmim
whop.eg.toPath	whop.eg.toPath
whop.eg.toPmid	whop.eg.toPmid
whop.eg.toRefseq	whop.eg.toRefseq
whop.eg.toUnigene	whop.eg.toUnigene
whop.eg.toUniprot	whop.eg.toUniprot
whop.go.all_genes_for_term	whop.go.all_genes_for_term
whop.go.connect	whop.go.connect
whop.go.goid_like	whop.go.goid_like
whop.go.is_obsolete_byid	whop.go.is_obsolete_byid
whop.go.is_obsolete_byname	whop.go.is_obsolete_byname
whop.go.load	whop.go.load
whop.go.match	whop.go.match
whop.go.terms_match	whop.go.terms_match
whop.go.term_ancestors	whop.go.term_ancestors
whop.go.term_ancestors_similar	whop.go.term_ancestors_similar
whop.go.term_children	whop.go.term_children
whop.go.term_synonyms	whop.go.term_synonyms
whop.kegg.pathway_url	whop.kegg.pathway_url
whop.ped.daughtersOf	whop.ped.daughtersOf
whop.ped.entriesOf	whop.ped.entriesOf
whop.ped.familyOf	whop.ped.familyOf
whop.ped.fathers	whop.ped.fathers
whop.ped.females	whop.ped.females
whop.ped.fromPop	whop.ped.fromPop
whop.ped.load	whop.ped.load
whop.ped.males	whop.ped.males
whop.ped.mothers	whop.ped.mothers
whop.ped.names	whop.ped.names
whop.ped.parentsOf	whop.ped.parentsOf
whop.ped.save	whop.ped.save
whop.ped.siblingsOf	whop.ped.siblingsOf
whop.ped.sonsOf	whop.ped.sonsOf
whop.ucsc.geneInfo	whop.ucsc.geneInfo
whop.ucsc.geneInfoSimilar	whop.ucsc.geneInfoSimilar
whop.ucsc.genesForRegion	whop.ucsc.genesForRegion
whop.ucsc.query	whop.ucsc.query
WhopGenome	WhopPkg-package
