CA19_9                  Reproducibility Example Dataset from CLSI
                        EP05-A3
Csweep                  Calling C-implementation of the SWEEP-Operator
DfSattHelper            Variance-Covariance Matrix of Fixed Effects as
                        Function of Covariance Parameter Estimates.
Glucose                 Inermediate Precision Data from CLSI EP05-A3
HugeData                Huge Dataset with Three Variables
MLrepro                 Multi-Lot Reproducibility Data.
MPinv                   Moore-Penrose Generalized Inverse of a Matrix.
Orthodont               Orthodont dataset from R-package 'nlme'
ReproData1              Multi-Site Data for Estimating Reproducibility
                        Precision
SattDF                  Satterthwaite Approximation for Total Degrees
                        of Freedom and for Single Variance Components.
Scale                   Automatically Scale Data Calling These
                        Functions: 'anovaVCA', 'anovaMM', 'remlVCA' or
                        'remlMM'.
Sinv                    Calling C-implementation of the SWEEP-Operator
                        for Matrix-Inversion
Solve                   Solve System of Linear Equations using Inverse
                        of Cholesky-Root.
Trace                   Compute the Trace of a Matrix.
VCA-package             (V)ariance (C)omponent (A)nalysis.
VCAdata1                Simulated Data for Variance Component Analysis.
VCAinference            Inferential Statistics for VCA-Results.
anovaDF                 ANOVA Type-I Degrees of Freedom.
anovaMM                 ANOVA-Type Estimation of Mixed Models.
anovaVCA                ANOVA-Type Estimation of Variance Components
                        for Random Models.
as.matrix.VCA           Standard 'as.matrix' Method for 'VCA'
                        S3-Objects.
as.matrix.VCAinference
                        Standard 'as.matrix' Method for 'VCAinference'
                        S3-Objects.
buildList               Build a Nested List.
check4MKL               Check for Availability of Intel's Math Kernel
                        Library.
chol2invData            Dataset Generating Error in Function 'chol2inv'
coef.VCA                Extract Fixed Effects from 'VCA' Object.
dataEP05A2_1            Simulated Data of a CLSI EP05-A2 20/2/2
                        Experiment
dataEP05A2_2            Simulated Data of a CLSI EP05-A2 20/2/2
                        Experiment
dataEP05A2_3            Simulated Data of a CLSI EP05-A2 20/2/2
                        Experiment
dataEP05A3_MS_1         Simulated Data of a CLSI EP05-A3 3/5/5
                        Multi-Site Experiment
dataEP05A3_MS_2         Simulated Data of a CLSI EP05-A3 3/5/5
                        Multi-Site Experiment
dataEP05A3_MS_3         Simulated Data of a CLSI EP05-A3 3/5/5
                        Multi-Site Experiment
dataRS0003_1            Simulated Repeated Measurements Data.
dataRS0003_2            Simulated Repeated Measurements Data.
dataRS0003_3            Simulated Repeated Measurements Data.
dataRS0005_1            Simulated Data of 5/3 Experiment.
dataRS0005_2            Simulated Data of 5/3 Experiment.
dataRS0005_3            Simulated Data of 5/3 Experiment.
fitLMM                  Fit Linear Mixed Model by ANOVA or REML.
fitVCA                  Fit Variance Component Model by ANOVA or REML.
fixef                   Generic Method for Extracting Fixed Effects
                        from a Fitted Model.
fixef.VCA               Extract Fixed Effects from 'VCA' Object.
getAmatrix              Determine A-Matrix.
getBasis                Get Orthogonal Basis of a Matrix.
getCmatrix              Coefficient Matrix for (V)ariance (C)omponent
                        (A)nalysis.
getDDFM                 Degrees of Freedom for Testing Linear Contrasts
                        of Fixed Effects and Least Square Means.
getDF                   Extract Degrees of Freedom from Linear
                        Hypotheses of Fixed Effects or LS Means.
getGB                   Giesbrecht & Burns Approximation of the
                        Variance-Covariance Matrix of Variance
                        Components.
getL                    Construct Linear Contrast Matrix for Hypothesis
                        Tests.
getMM                   Overparameterized Design Matrices.
getMat                  Extract a Specific Matrix from a 'VCA' Object.
getSSQqf                ANOVA Sum of Squares via Quadratic Forms
getSSQsweep             ANOVA Sum of Squares via Sweeping.
getV                    Determine V-Matrix for a 'VCA' Object.
getVCvar                Covariance-Matrix of Variance Components.
isBalanced              Check Whether Design Is Balanced Or Not.
legend.m                Add Legend to Margin.
lmerG                   Construct Variance-Covariance Matrix of Random
                        Effects for Models Fitted by Function 'lmer'.
lmerMatrices            Derive and Compute Matrices for Objects Fitted
                        by Function 'lmer'.
lmerSummary             Derive VCA-Summary Table from an Object Fitted
                        via Function 'lmer'.
load_if_installed       Load 'RevoUtilsMath'-package if available.
lsmMat                  Contrast Matrix for LS Means.
lsmeans                 Least Squares Means of Fixed Effects.
model.frame.VCA         Extract the Model Frame from a 'VCA' Object.
model.matrix.VCA        Model Matrix of a Fitted VCA-Object.
orderData               Re-Order Data.Frame.
plot.VCA                Standard 'plot' Method for 'VCA' S3-Objects.
plotRandVar             Plot Random Variates of a Mixed Model ('VCA'
                        Object).
predict.VCA             Predictions from a Model Fitted by 'fitLMM'.
print.VCA               Standard Printing Method for Objects of Class
                        'VCA'.
print.VCAinference      Standard Print Method for Objects of Class
                        'VCAinference'.
ranef                   Generic Method for Extracting Random Effects
                        from a Fitted Model.
ranef.VCA               Extract Random Effects from 'VCA' Object.
reScale                 Re-Scale results of 'VCA' or 'VCAinference'
                        objects which were constructed using scaled
                        values of the response variable.
realData                Real-World Data
remlMM                  Fit Linear Mixed Models via REML.
remlVCA                 Perform (V)ariance (C)omponent (A)nalysis via
                        REML-Estimation.
residuals.VCA           Extract Residuals of a 'VCA' Object.
scaleData               Scale Response Variable to Ensure Robust
                        Numerical Calculations.
sleepstudy              sleepstudy dataset from R-package 'lme4'
solveMME                Solve Mixed Model Equations.
stepwiseVCA             Bottom-Up Step-Wise VCA-Analysis of the
                        Complete Dataset.
test.fixef              Perform t-Tests for Linear Contrasts on Fixed
                        Effects.
test.lsmeans            Perform t-Tests for Linear Contrasts on LS
                        Means.
varPlot                 Variability Chart for Hierarchical Models.
vcov.VCA                Calculate Variance-Covariance Matrix of Fixed
                        Effects for an 'VCA' Object.
vcovFixed               Calculate Variance-Covariance Matrix and
                        Standard Errors of Fixed Effects for an 'VCA'
                        Object.
vcovVC                  Calculate Variance-Covariance Matrix of
                        Variance Components of 'VCA' objects.
