# A Graphical Model Approach to Identify Primary Genes in Perturbed Biological Pathways

## Documentation for package ‘SourceSet’ version 0.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

easyLookSource | Easy look results
getPermutations | Get random permutations of a set of elements
infoSource | Get summary statistics on graphs and variables
parameters | Estimation of parameters for test equality of two normal distributions
ripAllRootsClique | All possible RIP orderings
shrinkTEGS | Default shrinkage estimation of covariance matrices
simulation | Simulated dataset
sourceCytoscape | Visualize in Cytoscape a collection of graphs analyzed with the source set algorithm
sourceSankeyDiagram | Create a D3 JavaScript Sankey diagram
sourceSet | Source Set
sourceUnionCytoscape | Visualize in Cytoscape the graphical union induced by the source sets of a collection of graphs
testMeanVariance | Test the equality of two normal distributions