SMITIDvisu-package      Visualize Data for Host and Viral Population
                        from SMITIDstruct using HTMLwidgets
SMITIDvisu-shiny        Shiny bindings for visualisation widgets
demo.SMITIDvisu.run     demo.SMITIDvisu.run
hostline                A host infomation over time
mstCompute              compute the minimum spanning tree
mstVariant              mstVariant
mstVariantProxy         mstVariantProxy
st                      A SMITIDstruct package variable.
st.dist113_2            Distance matrix of observed variants sequences
                        of a host 113 at time 2 from simulation.
st.dist113_all          Distance matrix of observed variants sequences
                        of a host 113 at time 2, 3 and 4 from
                        simulation.
st.listTimeProp113      List of variants ID with subvector for time and
                        value.
st.prop113_2            Variants proportions and count for host 113 at
                        time 2 from simulation.
st.prop113_all          Variants proportions and count for an host 113
                        at time 2, 3 and 4 from simulation.
timeLine                timeLine
timeLineProxy           timeLineProxy get an instance of a timeline
transmissionTree        transmissionTree
tt.edges                Pathogen link over the time
tt.nodes                Host list with there status over the time.
updateTimeLine          updateTimeLine
updatemstVariant        updatemstVariant
