# Facilities for Simulating from ODE-Based Models

## Documentation for package ‘RxODE’ version 0.8.0-9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

+.solveRxDll | rxChain Chain or add item to solved system of equations
.rxRmPrint | Remove print statements
.rxRmSens | Remove sensitivity equations
.rxRtoolsBaseWin | Return Rtools base
.rxSymPyJacobian | Calculate the full Jacobian for a model
.rxWinRtoolsPath | Setup Rtools path
add.dosing | Add dosing to eventTable
add.sampling | Add sampling to eventTable
cholSE | Generalized Cholesky Matrix Decomposition
coef.RxCompilationManager | Return the RxODE coefficients
coef.rxDll | Return the RxODE coefficients
coef.RxODE | Return the RxODE coefficients
coef.solveRxODE | Return the RxODE coefficients
coxBox | Cox Box transformation
cvPost | Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
eventTable | Create an event table object
genShinyApp.template | Generate an example (template) of a dosing regimen shiny app
is.rxSolve | Check to see if this is an rxSolve object.
predict.RxODE | Solves a ODE equation
predict.rxSolve | Solves a ODE equation
print.rxCoefSolve | Print the rxCoefSolve object
print.RxODE | Print information about the RxODE object.
rinvchisq | Scaled Inverse Chi Squared distribution
rxAddReturn | Add a return statment to a function.
rxAssignPtr | Assign pointer based on model variables
rxChain | rxChain Chain or add item to solved system of equations
rxClean | Cleanup anonymous DLLs
rxCompile | Compile a model if needed
rxCompile.character | Compile a model if needed
rxCompile.rxDll | Compile a model if needed
rxCompile.RxODE | Compile a model if needed
rxCores | Get the number of cores in a system
rxDelete | Delete the DLL for the model
rxDfdy | Jacobian and parameter derivatives
rxFoExpandEta | First Order Expansion of ETA
rxGetRxODE | Get RxODE model from object
rxHtml | Format rxSolve and related objects as html.
rxHtml.rxSolve | Format rxSolve and related objects as html.
rxInv | Invert matrix using Rcpp Armadilo.
rxIsCurrent | Checks if the RxODE object was built with the current build
rxLhs | Left handed Variables
rxNorm | Get the normalized model
RxODE | Create an ODE-based model specification
rxOptExpr | Optimize RxODE for computer evaluation
rxOptions | Options for RxODE
rxParam | Parameters specified by the model
rxParams | Parameters specified by the model
rxPermissive | Permissive or Strict RxODE sytax options
rxProgress | RxODE progress bar functions
rxProgressAbort | RxODE progress bar functions
rxProgressStop | RxODE progress bar functions
rxSetProd | Choose the type of product to use in RxODE. These are used in the RxODE 'prod' blocks
rxSetSum | Choose the type of sums to use for RxODE.
rxShiny | Use Shiny to help develop an RxODE model
rxShiny.default | Use Shiny to help develop an RxODE model
rxShiny.rxSolve | Use Shiny to help develop an RxODE model
rxSimThetaOmega | Simulate Parameters from a Theta/Omega specification
rxSolve | Solves a ODE equation
rxSolve.default | Solves a ODE equation
rxState | State variables
rxStrict | Permissive or Strict RxODE sytax options
rxSumProdModel | Recast model in terms of sum/prod
rxSymInvChol | Get Omega^-1 and derivatives
rxSymPyFix | Fix SymPy expressions to be R parsable expressions
rxSymPySensitivity | Calculate the sensitivity equations for a model
rxSymPyVersion | Return the version of SymPy that is running
rxSyncOptions | Sync options with RxODE varaibles
rxTest | Validate RxODE
rxTick | RxODE progress bar functions
rxTrans | Translate the model to C code if needed
rxTrans.character | Translate the model to C code if needed
rxTrans.default | Translate the model to C code if needed
rxValidate | Validate RxODE
rxWinPythonSetup | Setup Python and SymPy for windows
rxWinSetup | Setup Windows components for RxODE
simulate.RxODE | Solves a ODE equation
simulate.rxSolve | Solves a ODE equation
solve.RxODE | Solves a ODE equation
solve.rxSolve | Solves a ODE equation
sqrtm | Return the square root of general square matrix A
summary.RxODE | Print expanded information about the RxODE object.
update.rxSolve | Solves a ODE equation
write.template.server | Generate an example (template) of a dosing regimen shiny app
write.template.ui | Generate an example (template) of a dosing regimen shiny app
yeoJohnson | Yeo-Johnson Transformation