.Assign_Layout_Matrix   Hidden function for assigning layout matrix
.Gen_R                  .Gen_R - internal methods for generating Rnets.
Assign_Emetadata        Assign_Emetadata - Methods for assigning
                        network edge metadata
Assign_Vmetadata        Assign_Vmetadata - Methods for assigning
                        network vertex metadata
Clean_Sigma             Clean_Sigma function
EC_COORDS               Example Vertex coordinates
E_ATTRS                 Sample Edge Attributes
Estimate_pCorrs         Estimation of partial correlation matrix from
                        precision matrix
L1Selection             L1 Selection for Rnets
NARMS_EC_DATA           E. coli Isolate information from Nat'l
                        Antimicrobial Resistance Monitoring System.
Rnet                    R-net Methods
Rnet_Heatmap            Rnet_Heatmap - Function to generate a bitmap
                        figure to represent edges in similar networks
                        over time.
Sq2Long                 Matrix reshaping function
V_ATTRS                 Sample Vertex Attributes for NARMS_EC_DATA
image.edge_heatmap      image() method for plotting Rnet heatmaps
plot,rnetBasic-method   Plot methods for R-nets
print,rnetBasic-method
                        Print methods of rnet objects.
rnetBasic-class         An S4 class containg the information of a basic
                        rnet. These objects are used to handle rnet
                        objects and need not be called by the user.
rnetInput-class         An S4 class for accepting input data common for
                        generating all rnet objects. These objects are
                        used to handle rnet objects and need not be
                        called by the user.
rnetStrata-class        An S4 class containing multiple Rnets, each the
                        information of an rnet representing one stratum
                        of data. These objects are used to handle rnet
                        objects and need not be called by the user.
rnetSubset-class        An S4 class containing the information of an
                        rnet representing one stratum of data. These
                        objects are used to handle rnet objects and
                        need not be called by the user.
signed_modularity       Robust Estimator of modularity (Gomez, et al
                        2009)
signed_modularity,igraph-method
                        signed_modularity-igraph
signed_modularity,matrix-method
                        signed_modularity-matrix
signed_modularity,rnetBasic-method
                        signed_modularity-rnetBasic
signed_modularity,rnetStrata-method
                        signed_modularity-rnetMultiStrata
summary,rnet.L1.set-method
                        Summary - L1 selection object
summary,rnetBasic-method
                        Summary - rnetBasic
summary,rnetStrata-method
                        Summary - rnetStrata
summary,rnetSubset-method
                        Summary - rnetSubset
