DataApes                Example dataset
DataCetaceans           Example dataset
DataFelids              Example dataset
DataOrnithodirans       Example dataset
DataUng                 Example dataset
PGLS_fossil             Phylogenetic Generalized Least Square with
                        fossil phylogenies
RBC                     Rate By Clade
RRphylo                 Evolutionary rates computation along
                        phylogenies
RRphylo-package         Phylogenetic Ridge Regression Methods for
                        Comparative Studies
angle.matrix            Ontogenetic shape vectors analysis
distNodes               Finding distance between nodes and tips
evo.dir                 Phylogenetic vector analysis of phenotypic
                        change
getMommy                Upward tip or node to root path
getSis                  Get sister clade
makeFossil              Make fossil species on a phylogeny
makeL                   Matrix of branch lengths along root-to-tip
                        paths
makeL1                  Matrix of branch lengths along a root-to-node
                        path
plotRates               Plot RRphylo rates at a specified node
retrieve.angles         Extracting a user-specified subset of the
                        evo.dir results
search.conv             Searching for morphological convergence among
                        species and clades
search.shift            Locating shifts in phenotypic evolutionary
                        rates
search.trend            Searching for evolutionary trends in phenotypes
                        and rates
setBM                   Producing simulated phenotypes with trends
sizedsubtree            Find a node subtending to a clade of desidered
                        size
swap.phylo              Test the effect of phylogenetic uncertainty on
                        rate shifts found at a particular node
swapONE                 Create alternative phylogenies from a given
                        tree
