# bigleaf package replacing GeoFunctions of REddyProc

`REddyProc` package included several utility functions that were somewhat out of the package scope. These functions are removed from package.

This vignette shows how to replace them by functions from the `bigleaf` package.

    if (!require("bigleaf", quietly = TRUE)) stop(
      "bigleaf package must be installed to create this vignette.")

    ## Warning: package 'bigleaf' was built under R version 3.5.3

    library(REddyProc)

## Vapour pressure deficit (VPD)

Vapour pressure deficit (VPD) was computed with REddyProc in \(hPa\) from relative humidity in \(\%\) and air temperature in \(^{\circ}C\).

    VPD0 <- fCalcVPDfromRHandTair(DEGebExample$rH, DEGebExample$Tair)

`bigleaf` package computes VPD in \(kPa\) and requires relative humidity as fraction .

    VPD.hPa <- rH.to.VPD(DEGebExample$rH/100, DEGebExample$Tair)*10

Saturation vapor pressure (SVP) or eSat in \(hPa\) was computed from air temperature.

    Tair <- seq(10,25,by = 5)

    eSat0 <- fCalcSVPfromTair(Tair)

is replaced by `Esat.slope` which uses \(kPa\) as pressure unit:

    (eSat <- Esat.slope(Tair)$Esat * 10)

    ## [1] 12.26030 17.01672 23.32596 31.60057

Actual vapor pressure (AVP) or e in \(hPa\) was also computed from Vapor mole fraction (VMF) in \(mol/mol\) and pressure in \(hPa\).

    VMF <- seq(0.01,0.03,by = 0.005)
    press.in.hPa <- 1000

    e0 <- fCalcAVPfromVMFandPress(VMF, press.in.hPa)

There is no replacement function, as this is just the multiplication of the two arguments.

    (e <- VMF * press.in.hPa)

    ## [1] 10 15 20 25 30

Relative humidity (rH) in \(\%\) was computed from AVP in \(hPa\) and temperature.

    e.in.hPa <- seq(0,30,by = 5)
    Tair <- 25

    (rH0 <- fCalcRHfromAVPandTair(e.in.hPa, Tair))

Again this is replaced by a function using pressure units \(kPa\) and relative humidity as fraction.

    (rH <- e.to.rH(e.in.hPa/10, Tair)*100)

    ## [1]  0.0000 15.8225 31.6450 47.4675 63.2900 79.1125 94.9350

## Evapotranspiration from latent heat and air temperature

    LE <- seq(300,500,by = 50)
    Tair <- 25

    ET0 <- fCalcETfromLE(LE, Tair)

The corresponding bigleaf function `LE.to.ET` returns a value in kg/m2/s. This needs to be converted to mmol/m2/s as returned by the former `fCalcETfromLE`.

    ETkg <- LE.to.ET(LE, Tair)
    (ETmmol <- kg.to.mol(ETkg)*1000)

    ## [1]  6.819916  7.956569  9.093222 10.229874 11.366527

## Converting visible radiation from irradiance to photons flux

Photon flux density (PPFD) of visible light can be computed from energy in incoming radiation

    Rg <- 200

`bigleaf` function `Rg.to.PPFD` combines the two former REddyProc functions `fConvertVisibleWm2toPhotons` and `fConvertGlobalToVisible`.

    PPFDVis0 <- fConvertGlobalToVisible(fConvertVisibleWm2toPhotons(Rg))

    (PPFDVis <- Rg.to.PPFD(Rg))

    ## [1] 460

The PPFD of light including non-visible parts, i.e. former `fConvertVisibleWm2toPhotons`, is obtained by setting argument `frac_PAR` to 1.

    (PPFDAll <- Rg.to.PPFD(Rg, frac_PAR = 1))

    ## [1] 920

## Potential and Extraterrestrial solar radiation

Potential radiation (\(W m^{-2}\)) depends on time and geo-location.

    doy <- 160
    hour <- seq(6,18,by = 0.2)
    latDeg <- 39.94
    longDeg <- -5.77
    timezone <- +1

Formerly, REddyProc provided:

    (potRad0 <- fCalcPotRadiation(doy, hour, latDeg, longDeg, timezone))

This is replaced by bigleaf:

    head(potRad <- potential.radiation(doy, hour, latDeg, longDeg, timezone))

    ## [1]   1.722378  48.072563  95.193985 142.957488 191.232157 239.885672

Extraterrestrial solar radiation was formerly computed by REddyProc by:

    (extRad0 <- fCalcExtRadiation(doy))

This is replaced by bigleaf:

    (extRad <- extraterrestrial.radiation(doy))

    ## [1] 1324.598

Required computation of sun position (`computeSunPosition`) and difference between apparent local time time and time zone time (`computeSolarToLocalTimeDifference`) have been moved to package `solartime`.