ASExons                 "ASExons"
AnnotateGeneSymbol      "AnnotateGeneSymbol"
AnnotateGenes           "AnnotateGenes"
CreateOutput            "CreateOutput"
DataProcessing          DataProcessing
ExampleFirmaOutput      Example data set for FIRMA
ExonTesting             "ExonTesting"
ExpressionLevelPlot     "ExpressionLevelPlot"
FIRMAScores             "FIRMAScores"
GetIntensities          "GetIntensities"
JunInfo                 JunInfo
PivotTransformData      "PivotTransformation"
REIDS                   Random Effects for the Identification of
                        Differential Splicing.
REIDSFunction           "REIDSFunction"
REIDSFunction_HPCVersion
                        "REIDS_HPCVersion"
REIDSJunctionAssessment_HPCVersion
                        REIDSJunctionAssessment_HPCVersion
REIDS_Analysis          REIDS_Analysis
REIDS_IsoformAssesment
                        REIDS_IsoformAssesment
REIDS_JunctionAssesment
                        REIDS_JunctionAssessment
REIDSmodel_intern       "REIDSmodel_intern"
REMAP_SplitProbeSets    "REMAP_SplitProbeSets"
SpliceIndex             "SpliceIndex"
TC12000010              Example data set
TC12000010_ExonLevel    Exon level data
TC12000010_GeneLevel    Gene level data
TC12000010_REIDS_Output
                        REIDS Output
TC12000010_positions    Positions
TC12000010_transcript.clusters
                        Transcript Clusters
TC1500264               Example data set
TranscriptsPlot         "TranscriptsPlot "
arcplot                 Arc Diagram Plot
iniREIDS                "iniREIDS"
node_coords             Node Coordinates
reidsfunction_genebygene
                        "reidsfunction_genebygene"
trim                    "trim"
xynodes                 X or Y coordinates of node locations
