# Random Effects for the Identification of Differential Splicing

## Documentation for package ‘REIDS’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

REIDS-package | Random Effects for the Identification of Differential Splicing.
AnnotateGenes | "AnnotateGenes"
AnnotateGeneSymbol | "AnnotateGeneSymbol"
arcplot | Arc Diagram Plot
ASExons | "ASExons"
CreateOutput | "CreateOutput"
DataProcessing | DataProcessing
ExampleFirmaOutput | Example data set for FIRMA
ExonTesting | "ExonTesting"
ExpressionLevelPlot | "ExpressionLevelPlot"
FIRMAScores | "FIRMAScores"
GetIntensities | "GetIntensities"
iniREIDS | "iniREIDS"
JunInfo | JunInfo
node_coords | Node Coordinates
PivotTransformData | "PivotTransformation"
REIDS | Random Effects for the Identification of Differential Splicing.
REIDSFunction | "REIDSFunction"
reidsfunction_genebygene | "reidsfunction_genebygene"
REIDSFunction_HPCVersion | "REIDS_HPCVersion"
REIDSJunctionAssessment_HPCVersion | REIDSJunctionAssessment_HPCVersion
REIDSmodel_intern | "REIDSmodel_intern"
REIDS_Analysis | REIDS_Analysis
REIDS_IsoformAssesment | REIDS_IsoformAssesment
REIDS_JunctionAssesment | REIDS_JunctionAssessment
REMAP_SplitProbeSets | "REMAP_SplitProbeSets"
SpliceIndex | "SpliceIndex"
TC12000010 | Example data set
TC12000010_ExonLevel | Exon level data
TC12000010_GeneLevel | Gene level data
TC12000010_positions | Positions
TC12000010_REIDS_Output | REIDS Output
TC12000010_transcript.clusters | Transcript Clusters
TC1500264 | Example data set
TranscriptsPlot | "TranscriptsPlot "
trim | "trim"
xynodes | X or Y coordinates of node locations