Package: Quartet
Version: 1.0.2
Date: 2019-03-06
Title: Comparison of Phylogenetic Trees Using Quartet and Bipartition
        Measures
Description: Calculates the number of four-taxon subtrees consistent with a pair
  of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986),
  Reconstructing the shape of a tree from observed dissimilarity data,
  Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, 
  and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
  computing the quartet and triplet distances between binary or general trees,
  Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157>
  for pairs of bifurcating trees.
URL: https://github.com/ms609/Quartet
BugReports: https://github.com/ms609/Quartet/issues
Authors@R: c(person("Martin R.", 'Smith',
                  email='martin.smith@durham.ac.uk',
                  role=c("aut", "cre", "cph"), 
                  comment=c(ORCID = "0000-0001-5660-1727")),
               person('Andreas', 'Sand', role=c('ant')),
               person('Gerth', 'Stølting Brodal', role=c('ant')),
               person('Rolf', 'Fagerberg', role=c('ant')),
               person('Thomas', 'Mailund', role=c('ant')),
               person('Christian N. S.', 'Pedersen', email='cstorm@birc.au.dk',
                      role=c('ant')),
               person('Jens', 'Johansen', role=c('ant')),
               person('Morten K.', 'Holt', role=c('ant'))
            )
Copyright: Incorporates code modified from tqDist
        <doi:10.1093/bioinformatics/btu157>.
License: GPL (>= 2)
Encoding: UTF-8
Language: en-GB
Depends: R (>= 3.4.0)
Imports: ape, memoise, Rdpack, Ternary (>= 1.0), TreeSearch (>= 0.2.1)
Suggests: bookdown, knitr, phangorn, Rcpp, rmarkdown, testthat, usethis
RdMacros: Rdpack
LinkingTo: Rcpp
LazyData: true
ByteCompile: true
VignetteBuilder: knitr
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-03-06 11:53:03 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Andreas Sand [ant],
  Gerth Stølting Brodal [ant],
  Rolf Fagerberg [ant],
  Thomas Mailund [ant],
  Christian N. S. Pedersen [ant],
  Jens Johansen [ant],
  Morten K. Holt [ant]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2019-03-06 13:00:10 UTC
Built: R 3.4.4; x86_64-w64-mingw32; 2019-04-25 21:34:16 UTC; windows
Archs: i386, x64
