Package: PTXQC
Type: Package
Title: Quality Report Generation for MaxQuant Results
Version: 0.92.6
Date: 2019-04-16
Author: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the 
             MaxQuant software suite.
             Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
             Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) 'doi:10.1021/acs.jproteome.5b00780'.
SystemRequirements: pandoc (http://pandoc.org) for building Vignettes
        and output reports as HTML
Depends: R (>= 3.0.0)
Imports: data.table, ggplot2 (>= 2.2), ggdendro, graphics, grid,
        gridExtra, grDevices, gtable, kableExtra, knitr (>= 1.10),
        methods, plyr, proto, RColorBrewer, reshape2, rmarkdown,
        seqinr, stats, utils, yaml
Suggests: testthat
VignetteBuilder: knitr
License: GPL-2
RoxygenNote: 6.1.1
URL: https://github.com/cbielow/PTXQC
BugReports: https://github.com/cbielow/PTXQC/issues
NeedsCompilation: no
Packaged: 2019-04-16 13:18:27 UTC; bielow
Repository: CRAN
Date/Publication: 2019-04-16 14:02:49 UTC
Built: R 3.4.4; ; 2019-04-25 22:14:13 UTC; windows
