CSEGriskfigure          Plot Extinction Risk Metrics
CSEGtmufigure           Plot Forecast Uncertainty
MARSS                   MARSS Model Specification and Estimation
MARSS-package           Multivariate Autoregressive State-Space Model
                        Estimation
MARSS.dfa               Multivariate Dynamic Factor Analysis
MARSS.marss             Multivariate AR-1 State-space Model
MARSS.marxss            Multivariate AR-1 State-space Model with Inputs
MARSSaic                AIC for MARSS Models
MARSSapplynames         Names for marssMLE Object Components
MARSSboot               Bootstrap MARSS Parameter Estimates
MARSSharveyobsFI        MARSS Hessian Matrix via the Harvey (1989)
                        Recursion
MARSShatyt              Compute Expected Value of Y,YY, and YX
MARSShessian            MARSS Parameter Variance-Covariance Matrix from
                        the Hessian Matrix
MARSShessian.numerical
                        MARSS Hessian Matrix via Numerical
                        Approximation
MARSSinfo               Information for MARSS Error Messages and
                        Warnings
MARSSinits              Initial Values for MLE
MARSSinnovationsboot    Bootstrapped Data using Stoffer and Wall's
                        Algorithm
MARSSkem                Maximum Likelihood Estimation for Multivariate
                        Autoregressive State-Space Models
MARSSkemcheck           Model Checking for MLE objects Passed to
                        MARSSkem
MARSSkf                 Kalman Filtering and Smoothing for Time-varying
                        MARSS models
MARSSoptim              Parameter estimation for MARSS models using
                        optim
MARSSparamCIs           Standard Errors, Confidence Intervals and Bias
                        for MARSS Parameters
MARSSsimulate           Simulate Data from a MARSS Model
MARSSvectorizeparam     Vectorize or Replace the par List
SalmonSurvCUI           Salmon Survial Indices
allowed.methods         MARSS Function Defaults and Allowed Methods
augment.marssMLE        Return the model predicted values, residuals,
                        and optionally confidence intervals
checkMARSSInputs        Check inputs to MARSS call
checkModelList          Check model List Passed into MARSS Call
coef.marssMLE           Coefficient function for MARSS MLE objects
fitted.marssMLE         fitted function for MARSS MLE objects
glance.marssMLE         Return brief summary information on a MARSS fit
graywhales              Population Data Sets
harborSeal              Harbor Seal Population Count Data (Log counts)
is.marssMODEL           Test Model Objects
isleRoyal               Isle Royale Wolf and Moose Data
ivesDataLP              Plankton Data Sets
loggerhead              Loggerhead Turtle Tracking Data
makediag                Matrix Utilities
marssMLE                Maximum Likelihood MARSS Estimation Object
marssMLE-class          Class "marssMLE"
marssMODEL              Class "marssMODEL"
marxss_to_marss         Convert Model Objects between Forms
model.frame.marssMODEL
                        model.frame method for marssMLE and marssMODEL
                        objects
plot.marssMLE           plotting functions for MARSS MLE objects
print.marssMLE          Printing functions for MARSS MLE objects
print.marssMODEL        Printing marssMODEL Objects
residuals.marssMLE      MARSS Standardized Residuals
stdInnov                Standardized Innovations
tidy.marssMLE           Return estimated parameters and states with
                        summary information
zscore                  z-score a vector or matrix
