CEdb                    CEs database
MS1_neg                 Example MS1 data set for id functions in ESI-
MS1_pos                 Example MS1 data set for id functions in ESI+
MSMS1_neg               Example MS2 data set for id functions in ESI-
                        (low energy)
MSMS1_pos               Example MS2 data set for id functions in ESI+
                        (low energy)
MSMS2_neg               Example MS2 data set for id functions in ESI-
                        (high energy)
MSMS2_pos               Example MS2 data set for id functions in ESI+
                        (high energy)
adductsTable            Adducts table
assignDB                load LipidMS default data bases
baconjdb                Bile acids conjugates database
badb                    Bile acids database
carnitinesdb            Carnitines database
cerdb                   ceramides database
chainFrags              Search of chain specific fragments
checkClass              Search of class fragments to confirm the lipid
                        class.
checkIntensityRules     Check intensity rules
cldb                    Cardiolipins database
coelutingFrags          Coeluting fragments extraction
coelutionScore          calculate coelution score between two peaks
combineChains           Combine chain fragments that could belong to
                        the same precursor.
confLevels              Confidence Annotation Levels
createLipidDB           Customizable lipid DBs creator
crossTables             Cross the original MS1 peaklist with the
                        annotation results
dataProcessing          Process mzXML files: peakpicking and
                        deisotoping
dgdb                    DGs database
fadb                    FAs database
fahfadb                 FAHFAs database
findCandidates          Search of lipid candidates of a certain class.
getInclusionList        Obtain an inclusion list from the annotation
                        results
hfadb                   HFAs database
idBAneg                 Bile Acids (BA) annotation for ESI-
idCEpos                 Cholesterol Esthers (CE) annotation for ESI+
idCLneg                 Cardiolipines (CL) annotation for ESI-
idCarpos                Carnitine annotation for ESI+
idCerneg                Ceramides (Cer) annotation for ESI-
idCerpos                Ceramides (Cer) annotation for ESI+
idDGpos                 Diacylglycerols (DG) annotation for ESI+
idFAHFAneg              FAHFA annotation for ESI-
idFAneg                 Fatty Acids (FA) annotation for ESI-
idLPCneg                Lysophosphocholines (LPC) annotation for ESI-
idLPCpos                Lysophosphocholines (LPC) annotation for ESI+
idLPEneg                Lysophosphoethanolamines (LPE) annotation for
                        ESI-
idLPEpos                Lysophosphoethanolamines (LPE) annotation for
                        ESI+
idLPGneg                Lysophosphoglycerols (LPG) annotation for ESI-
idLPIneg                Lysophosphoinositols (LPI) annotation for ESI-
idLPSneg                Lysophosphoserines (LPS) annotation for ESI-
idMGpos                 Monoacylglycerol (MG) annotation for ESI+
idNEG                   Lipids annotation for ESI-
idPCneg                 Phosphocholines (PC) annotation for ESI-
idPCpos                 Phosphocholines (PC) annotation for ESI+
idPEneg                 Phosphoethanolamines (PE) annotation for ESI-
idPEpos                 Phosphoethanolamines (PE) annotation for ESI+
idPGneg                 Phosphoglycerols (PG) annotation for ESI-
idPIneg                 Phosphoinositols (PI) annotation for ESI-
idPOS                   Lipids annotation for ESI+
idPSneg                 Phosphoserines (PS) annotation for ESI-
idSMpos                 Sphyngomyelines (SM) annotation for ESI+
idSphPneg               Sphingoid bases phosphate (SphP) annotation for
                        ESI-
idSphPpos               Sphingoid bases phosphate (SphP) annotation for
                        ESI+
idSphneg                Sphingoid bases (Sph) annotation for ESI-
idSphpos                Sphingoid bases (Sph) annotation for ESI-
idTGpos                 Triacylglycerols (TG) annotation for ESI+
lysopadb                LPAs database
lysopcdb                LPCs database
lysopedb                LPEs database
lysopgdb                LPGs database
lysopidb                LPIs database
lysopsdb                LPSs database
mgdb                    MGs database
nlsphdb                 Neutral losses db for sphingoid bases. It is
                        employed by idCerneg function.
organizeResults         Prepare output for LipidMS annotation functions
padb                    PAs database
pcdb                    PCs database
pedb                    PEs database
pgdb                    PGs database
pidb                    PIs database
psdb                    PSs database
searchIsotopes          Target isotopes search
sepByCE                 Separate .mzXML files by CE
smdb                    SMs database
sphPdb                  Sphingoid bases phosphate database
sphdb                   Sphingoid bases database
tgdb                    TGs database
