# ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis

## Documentation for package ‘ESEA’ version 1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calEdgeCorScore | Calculate the differential correlation score for edges
class.labels | The example data in the environment variable of the system
controlcharactor | The example data in the environment variable of the system
dataset | The example data in the environment variable of the system
EdgesBackgrandData | The data for the background set of edges
envData | The variables in the environment variable 'envData' of the system
ESEA.Main | Identify dysregulated pathways based on edge set enrichment analysis
GetEdgesBackgrandData | Get the data for background set of edges
GetExampleData | Get the example data
GetPathwayEdgeData | Get the edge sets of pathways
PathwayEdgeData | The edge sets of pathways
PlotGlobEdgeCorProfile | Plot global edge correlation profile
PlotPathwayGraph | Plot the pathway-result network diagram
PlotRunEnrichment | Plot running Edge enrichment score
Results | The example data in the environment variable of the system
SavePathway2File | Save a pathway-result network to a file which can be input to the Cytoscape software