# Distance Metrics for Trees Generated by Congreve and Lamsdell

## Documentation for package ‘CongreveLamsdell2016’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

clBootFreqPartitions | Congreve and Lamsdell tree distances
clBootFreqQuartets | Congreve and Lamsdell tree distances
clBootGcPartitions | Congreve and Lamsdell tree distances
clBootGcQuartets | Congreve and Lamsdell tree distances
clBremPartitions | Congreve and Lamsdell tree distances
clBremQuartets | Congreve and Lamsdell tree distances
clCI | Consistency indices
clColours | Default colours for analyses.
clInitializeTernaryQuarts | Initialize ternary plots for quartet plotting
clInitializeTernarySplits | Initialize ternary plots for quartet plotting
clJackFreqPartitions | Congreve and Lamsdell tree distances
clJackFreqQuartets | Congreve and Lamsdell tree distances
clJackGcPartitions | Congreve and Lamsdell tree distances
clJackGcQuartets | Congreve and Lamsdell tree distances
clMatrices | 100 simulated data matrices
clMkvPartitions | Congreve and Lamsdell tree distances
clMkvQuartets | Congreve and Lamsdell tree distances
clPhyDat | 100 simulated data matrices
clPlotAverageQuartets | Plot results
clPlotAverageSplits | Plot results
clPlotBestAverageSplits | Plot results
clPlotQuartets | Plot results
clPlotSplits | Plot results
clPlotTheseAverageQuartets | Plot results
clPlotTheseAverageSplits | Plot results
clPlotTheseBestAverageSplits | Plot results
clReferenceTree | Tree topology for matrix simulation
clResults | Congreve and Lamsdell tree distances