Cascade-package         The Cascade Package
Selection               Selection of genes.
analyze_network         Analysing the network
as.micro_array          Coerce a matrix into a micro_array object.
compare-methods         Some basic criteria of comparison between
                        actual and inferred network.
cutoff                  Choose the best cutoff
dim                     Dimension of the data
evolution               See the evolution of the network with change of
                        cutoff
geneNeighborhood        Find the neighborhood of a set of nodes.
genePeakSelection       Methods for selecting genes
gene_expr_simulation    Simulates microarray data based on a given
                        network.
inference               Reverse-engineer the network
methods                 Overview of a micro_array object
micro_array-class       Class '"micro_array"'
micropredict-class      Class '"micropredict"'
network                 A network object data.
network-class           Class '"network"'
network_random          Generates a network.
plot-methods            Plot
position-methods        Returns the position of edges in the network
predict                 Prediction of the gene expressions after a
                        knock-out experience 'predict'
print-methods           ~~ Methods for Function 'print' ~~
simul                   Simulated data for examples.
summary-methods         Methods for Function 'summary'
unionMicro-methods      Makes the union between two micro_array
                        objects.
