annotations             Saccharomyce cerevisiae genes annotations.
annotationsSet          Create a geneAnnotation object.
as.annotationsSet       Convert a data.table into a geneAnnotation
                        object.
bam_to_reads            Convert BAM files into BED files containing the
                        reads overlaping the specified annotations.
coverage                Report coverage.
coverageDataSet         Create a CoverageDataSet
enrichment_score        3' enrichment score
gene_coverage           Compute coverage data for a specific gene.
genome_wide_scores      Genome-wide cryptic scores.
initiation_sites        Cryptic transcription start sites (cTSS)
introns                 Saccharomyce cerevisiae introns annotations.
ratio_score             3'/5' ratio score
rna_seq_signals         Coverage dataset for FLO8, CDC14 and SNC1 gene.
yCrypticRNAs            Cryptic transcription analysis in yeast.
yer109c                 Coverage dataset for FLO8 gene.
zscore_score            Z score
