# Prepare Species Distributions for the Use in Phylogenetic Analyses

## Documentation for package ‘speciesgeocodeR’ version 1.0-4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

speciesgeocodeR-package | Prepare Species Distributions for the Use in Phylogenetic Analyses
CalcRange | Calculate the Extent of Occurrence
CoExClass | Species Coexistence Matrices in Given Areas.
countryref | Country Centroids and Country Capitals
GeoClean | Automated Cleaning of Geographic Coordinates
GetElevation | Elevation Data for Multiple Species
lemurs | Distribution of Lemur Species
lemurs_in | Example for an spgeoIN Object
lemurs_test | Distribution of Lemur Species with Problematic Records
MapGrid | Plotting Rasters in the Geographical Context
MapRichness | Plotting Species Richness in a Set of Polygons
mdg_biomes | WWF Biomes of Madagascar
mdg_poly | WWF Biomes of Madagascar in Table Format
plot.spgeoIN | Plot Method for SpgeoIN Objects
plot.spgeoOUT | Plot Method for SpgeoOUT Objects
PlotHull | Plotting Species Ranges
RangeRichness | Species Richness Raster from Range Polygons
ReadPoints | Loading Data into SpeciesgeocodeR
RichnessGrid | Species Richness and Abundance Grids from Point Records
SpeciesGeoCoder | A Complete SpeciesgeocodeR Analysis
speciesgeocodeR | Prepare Species Distributions for the Use in Phylogenetic Analyses
Spgc2BioGeoBEARS | Geography Input for BioGeoBEARS
SpGeoCod | Point to Polygon Classification from Text Files
SpGeoCodH | A Standard a SpeciesgeocodeR Area Classification
summary.spgeoIN | Summary Method for SpgeoIN
summary.spgeoOUT | Summary Method for SpgeoOUT
WriteOut | Write SpeciesgeocodeR results to the Working Directory
WwfLoad | Load the WWF Terrestrial Ecoregions