CV                      compute CV for each row in matrix
CVlog                   geometric coefficient of variation (CV for log
                        transformed data) Typically used to create and
                        violin plot
altmanbland             altman-bland plot
dat2Matrix              converts sparse representation to dense where
                        row and col can be character vectors
determineCut            determine best Accuracy cuttoff
distmy                  distance among matrix columns with freely
                        choosable distance function
fisherExact             get p-values using fishers exact test for count
                        data
getBlueScale            create blue color scale
getBlueWhiteRed         create blue white red palette
getDiv                  create divergent palette
getGreensScale          create green color scale
getRedScale             create red color scale
getTValuesForVolcano    get p-values of t-test values for volcano
getWRValuesForVolcano   get p-values of wilcoxon rank sum test for
                        volcano
imageColorscale         if you need an colorscale to you imagelables
                        use this
imageWithLabels         image plot with labels
imageWithLabelsNoLayout
                        image plot with labels
makeROCplot             create density plots of cases and controls and
                        ROC plot
mypairs                 normal pairs plot with different pch and plus
                        abline
onesamplegreaterT       One sample single sided t-test on matrix
pairsQQ                 pairsplot of QQ plots
plotOneSideVolcano      Plot and filter data coming from one sample
                        single sided t-test
pvalCorMat              pvalues for correlation matrix -
quantable               Streamline descriptive analysis of quantitative
                        data matrices
removeNArows            Removes rows with more than thresh NA's from
                        matrix
robustscale             robust scaling uses median an mad instead of
                        mean and row applies the scaling to the columns
                        (samples) by default
runFun                  running function (default median absolute
                        deviation)
runTICscale             running total ion count scaling (TIC)
runrobscale             running robust scaling of arefw
scaleByGroup            scale data given group
simpleheatmap           heatmap2 facade
split2table             splits names and creates a matrix
sumtop                  sums top rows of matrix uses median of row to
                        determine row order
unpivot                 unpivot data matrix
uppertriang             get values of upper triangle from matrix
volcanoplot             volcano plot
write.tab               write table in tab delimited no quotes no
                        row.names (usefull for exporting i.e. list of
                        foldchanges) uses write.table TODO : validate
                        if not redundant with other write functions
write.vector            write vectors as single column table (usefull
                        for exporting i.e. protein id's) uses
                        write.table
