Systematic Conservation Prioritization in R

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Documentation for package ‘prioritizr’ version 3.0.3

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A B C D F G I L M N O P R S T U V misc

prioritizr-package prioritizr

-- A --

A Optimization problem methods
A-method Optimization problem methods
add_absolute_targets Add Absolute Targets
add_absolute_targets-method Add Absolute Targets
add_binary_decisions Add Binary Decisions
add_boundary_penalties Add boundary penalties
add_connected_constraints Add connected constraints
add_connectivity_penalties Add connectivity penalties
add_corridor_constraints Add corridor constraints
add_cuts_portfolio Add a Bender's cuts portfolio
add_default_decisions Add default decisions
add_default_solver Default solver
add_feature_weights Add feature weights
add_gurobi_solver Add a Gurobi solver
add_locked_in_constraints Add locked in constraints
add_locked_in_constraints-method Add locked in constraints
add_locked_out_constraints Add locked out constraints
add_locked_out_constraints-method Add locked out constraints
add_loglinear_targets Add Loglinear Targets
add_lpsymphony_solver Add a SYMPHONY solver with lpsymphony
add_lsymphony_solver Add a SYMPHONY solver with lpsymphony
add_max_cover_objective Add Maximum Coverage Objective
add_max_features_objective Add Maximum Feature Representation Objective
add_max_phylo_objective Add Maximum Phylogenetic Representation Objective
add_max_utility_objective Add Maximum Utility Objective
add_min_set_objective Add Minimum Set Objective
add_neighbor_constraints Add neighbor constraints
add_proportion_decisions Add Proportion Decisions
add_relative_targets Add Relative Targets
add_relative_targets-method Add Relative Targets
add_rsymphony_solver Add a SYMPHONY solver with Rsymphony
add_semicontinuous_decisions Add semi-continuous decisions
add_shuffle_portfolio Add a shuffle portfolio
ArrayParameter Array Parameter prototype
ArrayParameter-class Array Parameter prototype
array_parameters Array parameters
as Coerce object to another object
as.Id Coerce object to another object
as.Id.character Coerce object to another object
as.list.OptimizationProblem Convert 'OptimizationProblem' to list
as.list.Parameters Coerce object to another object

-- B --

binary_parameter Scalar parameters
binary_parameter_array Array parameters
boundary_matrix Boundary matrix
boundary_matrix.data.frame Boundary matrix
boundary_matrix.Raster Boundary matrix
boundary_matrix.SpatialLines Boundary matrix
boundary_matrix.SpatialPoints Boundary matrix
boundary_matrix.SpatialPolygons Boundary matrix
branch_matrix Branch matrix
branch_matrix.default Branch matrix
branch_matrix.phylo Branch matrix

-- C --

Collection Collection prototype
Collection-class Collection prototype
col_ids Optimization problem methods
col_ids-method Optimization problem methods
compile Compile a problem
compile.ConservationProblem Compile a problem
compressed_formulation Optimization problem methods
compressed_formulation-method Optimization problem methods
connected_matrix Connected matrix
connected_matrix.data.frame Connected matrix
connected_matrix.Raster Connected matrix
connected_matrix.SpatialLines Connected matrix
connected_matrix.SpatialPoints Connected matrix
connected_matrix.SpatialPolygons Connected matrix
connectivity_matrix Connectivity matrix
connectivity_matrix-method Connectivity matrix
ConservationModifier Conservation problem modifier prototype
ConservationModifier-class Conservation problem modifier prototype
ConservationProblem Conservation problem class
ConservationProblem-class Conservation problem class
Constraint Constraint prototype
Constraint-class Constraint prototype
constraints Conservation problem constraints

-- D --

Decision Decision prototype
Decision-class Decision prototype
decisions Specify the type of decisions
distribute_load Distribute load

-- F --

fast_extract Fast extract
fast_extract-method Fast extract

-- G --

get_number_of_threads Number of threads for data processing

-- I --

Id Identifier
integer_parameter Scalar parameters
integer_parameter_array Array parameters
intersecting_units Find intersecting units
intersecting_units-method Find intersecting units
is Is it?
is.Id Is it?
is.parallel Is parallel?
is.Waiver Is it?

-- L --

lb Optimization problem methods
lb-method Optimization problem methods

-- M --

marxan_problem Marxan conservation problem
marxan_problem.character Marxan conservation problem
marxan_problem.data.frame Marxan conservation problem
marxan_problem.default Marxan conservation problem
modelsense Optimization problem methods
modelsense-method Optimization problem methods

-- N --

ncell Optimization problem methods
ncell-method Optimization problem methods
ncol Optimization problem methods
ncol-method Optimization problem methods
new_id Identifier
new_optimization_problem Optimization problem
new_waiver Waiver
nrow Optimization problem methods
nrow-method Optimization problem methods
number_of_features Optimization problem methods
number_of_features-method Optimization problem methods
number_of_planning_units Optimization problem methods
number_of_planning_units-method Optimization problem methods
numeric_parameter Scalar parameters
numeric_parameter_array Array parameters

-- O --

obj Optimization problem methods
obj-method Optimization problem methods
Objective Objective prototype
Objective-class Objective prototype
objectives Problem objective
OptimizationProblem Optimization problem class
OptimizationProblem-class Optimization problem class
OptimizationProblem-methods Optimization problem methods

-- P --

parallel Number of threads for data processing
Parameter Parameter class
Parameter-class Parameter class
Parameters Parameters class
parameters Parameters
Parameters-class Parameters class
penalties Conservation problem penalties
Penalty Penalty prototype
Penalty-class Penalty prototype
pipe Pipe operator
Portfolio Portfolio prototype
Portfolio-class Portfolio prototype
portfolios Solution portfolio methods
pproto Create a new 'pproto' object
predefined_optimization_problem Predefined optimization problem
print Print
prioritizr prioritizr
problem Conservation planning problem
problem-method Conservation planning problem
proportion_parameter Scalar parameters
proportion_parameter_array Array parameters

-- R --

rhs Optimization problem methods
rhs-method Optimization problem methods
rij_matrix Feature by planning unit matrix
rij_matrix-method Feature by planning unit matrix
row_ids Optimization problem methods
row_ids-method Optimization problem methods
run_calculations Run calculations

-- S --

ScalarParameter Scalar Parameter prototype
ScalarParameter-class Scalar Parameter prototype
scalar_parameters Scalar parameters
sense Optimization problem methods
sense-method Optimization problem methods
set_number_of_threads Number of threads for data processing
show Show
simulate_cost Simulate cost data
simulate_data Simulate data
simulate_species Simulate species habitat suitabilities
sim_data Simulated conservation planning data
sim_features Simulated conservation planning data
sim_locked_in_raster Simulated conservation planning data
sim_locked_out_raster Simulated conservation planning data
sim_phylogeny Simulated conservation planning data
sim_pu_lines Simulated conservation planning data
sim_pu_points Simulated conservation planning data
sim_pu_polygons Simulated conservation planning data
sim_pu_raster Simulated conservation planning data
solve Solve a problem
solve-method Solve a problem
Solver Solver prototype
Solver-class Solver prototype
solvers Problem solvers

-- T --

Target Target prototype
Target-class Target prototype
targets Targets
tee Tee operator

-- U --

ub Optimization problem methods
ub-method Optimization problem methods

-- V --

vtype Optimization problem methods
vtype-method Optimization problem methods

-- misc --

%>% Pipe operator
%T>% Tee operator