AvianFluH7N7_2003       Avian influenza (H7N7) epidemic
FMD_2001                Foot-and-Mouth Disease outbreak (2001)
FMD_2007                Foot-and-Mouth Disease outbreak (2007)
M_tuberculosis_2013     Mycobacterium tuberculosis outbreak
burnin.phybreak         MCMC updating of a phybreak-object.
get.phybreak            Accessing a phybreak object
infectorsets            Sampled infectors for each host in a
                        phybreak-object.
logLik.phybreak         Log-likelihood of a phybreak-object.
phybreak                Create a phybreak-object from data and prior
                        distributions.
phybreakdata            Create a phybreakdata-object from raw data.
phylotree               Maximum clade credibility tree.
plot.phybreak           Plotting a phybreak object.
plot.phybreakdata       Plotting a phybreakdata object.
plotPhylo               Plotting a phybreak object phylogenetic tree.
plotTrans               Plotting a phybreak object transmission tree.
sample.phybreak         Sampling from a phybreak MCMC-chain.
sim.phybreak            Outbreak simulation.
thin_phybreak           Remove posterior samples from a
                        phybreak-object.
transtree               Create a consensus transmission tree.
