![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
A B C D F G I L M N O P R S T V W
| as.data.frame.focei.fit | Convert focei fit to a data.frame |
| as.focei | Convert fit to FOCEi style fit |
| as.focei.nlmixr_nlme | Convert fit to FOCEi style fit |
| Bolus_1CPT | Bolus_1CPT - 1 Compartment Model Simulated Data from ACOP 2016 |
| Bolus_1CPTMM | 1 Compartment Model w/ Michelis Menton Elimination |
| Bolus_2CPT | 2 Compartment Model |
| Bolus_2CPTMM | 2 Compartment Model with Michelis Menton Clearance |
| bootdata | Bootstrap data |
| calcCov | Calculate gnlmm variance-covariance matrix of fixed effects |
| collectWarnings | Collect warnings and just warn once. |
| configsaem | Configure an SAEM model |
| dynmodel | Fit a non-population dynamic model |
| dynmodel.mcmc | Fit a non-population dynamic model using mcmc |
| fitted.focei.fit | Extract the fitted values from the model |
| focei.eta | Get the FOCEi theta or eta specification for model. |
| focei.eta.nlmixr_nlme | Get the FOCEi theta or eta specification for model. |
| focei.fit | FOCEI Fit for nlmixr |
| focei.fit.data.frame | FOCEI Fit for nlmixr |
| focei.fit.function | FOCEI Fit for nlmixr |
| focei.fit.nlmixr.ui.focei.fit | FOCEI Fit for nlmixr |
| focei.fit.nlmixr.ui.nlme | FOCEI Fit for nlmixr |
| focei.fit.nlmixrUI | FOCEI Fit for nlmixr |
| focei.theta | Get the FOCEi theta specification for the model |
| focei.theta.nlmixr_nlme | Get the FOCEi theta specification for the model |
| frwd_selection | Forward covariate selection for nlme-base non-linear mixed effect models |
| gauss.quad | Sets nodes and weigts of Gauss-Hermite quadrature |
| gen_saem_user_fn | Generate an SAEM model |
| getOMEGA | Calculate gnlmm variance-covariance matrix of random effects |
| gnlmm | Fit a generalized nonlinear mixed-effect model |
| gnlmm2 | Fit a generalized nonlinear mixed-effect model |
| Infusion_1CPT | Infusion_1CPT - 1 Compartment Model Simulated Data from ACOP 2016 |
| instant.stan.extension | instant.stan.extension. |
| invgaussian | Inverse Guassian absorption model |
| lincmt | Parameters for a linear compartment model for SAEM |
| lin_cmt | concentrations from a linear compartment model |
| logLik.focei.fit | Extract log likelihood for focei fit |
| metabolite | Parent/Metabolite dataset |
| nlme_gof | GOF plots for nlme-based mixed-effect models |
| nlme_lin_cmpt | Fit nlme-based linear compartment mixed-effect model using closed form solution |
| nlme_ode | Fit nlme-based mixed-effect model using ODE implementation |
| nlmixr | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixr.function | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixr.nlmixr.ui.focei.fit | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixr.nlmixr.ui.nlme | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixr.nlmixr.ui.saem | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixr.nlmixrUI | nlmixr fits population PK and PKPD non-linear mixed effects models. |
| nlmixrBounds.eta.names | Get ETA names |
| nlmixrBounds.focei.upper.lower | Get upper/lower/names for THETAs |
| nlmixrLogo | Messages the nlmixr logo... |
| nlmixrUI.focei.inits | Get the FOCEi initilizations |
| nlmixrUI.nlme.specs | Create the nlme specs list for nlmixr nlme solving |
| nlmixrUI.rxode.pred | Return RxODE model with predictions appended |
| nlmixrUI.saem.ares | Get initial estimate for ares SAEM. |
| nlmixrUI.saem.bres | Get initial estimate for bres SAEM. |
| nlmixrUI.saem.eta.trans | Get the eta->eta.trans for SAEM |
| nlmixrUI.saem.fit | Generate saem.fit user function. |
| nlmixrUI.saem.init | Get saem initilization list |
| nlmixrUI.saem.init.omega | SAEM's init$omega |
| nlmixrUI.saem.init.theta | Generate SAEM initial estimates for THETA. |
| nlmixrUI.saem.log.eta | Get model$log.eta for SAEM |
| nlmixrUI.saem.model | Generate SAEM model list |
| nlmixrUI.saem.model.omega | Get the SAEM model Omega |
| nlmixrUI.saem.res.mod | Get the SAEM model$res.mod code |
| nlmixrUI.saem.res.name | Get error names for SAEM |
| nlmixrUI.saem.theta.name | Get THETA names for nlmixr's SAEM |
| nlmixrUI.theta.pars | Get the Parameter function with THETA/ETAs defined |
| nlmixrUILinCmt | Build linear solved information based on defined parameters. |
| nlmixrValidate | Validate nlmixr |
| nlmixrVersion | Dispaly nlmixr's version |
| nlmixr_fit | Fit a nlmixr model |
| nmDataConvert | Convert NONMEM/Monolix data to RxODE/nlmixr style data |
| nmsimplex | Nelder-Mead of simplex search |
| nobs.focei.fit | Extract the number of observations for the focei fit |
| Oral_1CPT | Oral_1CPT - 1 Compartment Model with Oral Absorption Simulated Data from ACOP 2016 |
| par.hist | Parameter history extraction |
| par.hist.nlmixr.ui.focei.fit | Parameter history extraction |
| par.hist.nlmixr.ui.saem | Parameter history extraction |
| plot.dyn.ID | Plot of a non-population dynamic model fit |
| plot.dyn.mcmc | Plot of a non-population dynamic model fit using mcmc |
| plot.focei.fit | Plot a focei.fit plot |
| plot.saemFit | Plot an SAEM model fit |
| prediction | Prediction after a gnlmm fit |
| print.dyn.ID | Print a non-population dynamic model fit object |
| print.dyn.mcmc | Summary of a non-population dynamic model fit using mcmc |
| print.focei.fit | Print a focei fit |
| print.gnlmm.fit | Print a gnlmm fit |
| print.nlmixrUI | Print UI function |
| print.saemFit | Print an SAEM model fit summary |
| pump | Pump failure example dataset |
| rats | Pregnant Rat Diet Experiment |
| residuals.focei.fit | Extract residuals from the FOCEI fit |
| saem | Fit an SAEM model |
| saem.cleanup | Cleanup saem_fit environment by removing dll after the object is no logner used by R. |
| saem.fit | Fit an SAEM model |
| saem.fit.default | Fit an SAEM model |
| saem.fit.function | Fit an SAEM model |
| saem.fit.nlmixr.ui.nlme | Fit an SAEM model |
| saem.fit.nlmixrUI | Fit an SAEM model |
| saem.fit.RxODE | Fit an SAEM model |
| saemControl | Control Options for SAEM |
| simulate.focei.fit | Simulate response based on FOCEi model's datathe fitted object's dataset |
| summary.dyn.ID | Summary of a non-population dynamic model fit |
| summary.dyn.mcmc | Summary of a non-population dynamic model fit using mcmc |
| summary.saemFit | Print an SAEM model fit summary |
| theo_md | Multiple dose Theophiline PK data |
| theo_sd | Multiple dose Theophiline PK data |
| traceplot | Produce trace-plot for fit if applicable |
| traceplot.focei.fit | Produce trace-plot for fit if applicable |
| vcov.focei.fit | Extract variance/covariance matrix for FOCEI fit |
| vpc | Visual predictive check (VPC) |
| Wang2007 | Simulated Data Set for comparing objective functions |