Bolus_1CPT              Bolus_1CPT - 1 Compartment Model Simulated Data
                        from ACOP 2016
Bolus_1CPTMM            1 Compartment Model w/ Michelis Menton
                        Elimination
Bolus_2CPT              2 Compartment Model
Bolus_2CPTMM            2 Compartment Model with Michelis Menton
                        Clearance
Infusion_1CPT           Infusion_1CPT - 1 Compartment Model Simulated
                        Data from ACOP 2016
Oral_1CPT               Oral_1CPT - 1 Compartment Model with Oral
                        Absorption Simulated Data from ACOP 2016
Wang2007                Simulated Data Set for comparing objective
                        functions
as.data.frame.focei.fit
                        Convert focei fit to a data.frame
as.focei                Convert fit to FOCEi style fit
bootdata                Bootstrap data
calcCov                 Calculate gnlmm variance-covariance matrix of
                        fixed effects
collectWarnings         Collect warnings and just warn once.
configsaem              Configure an SAEM model
dynmodel                Fit a non-population dynamic model
dynmodel.mcmc           Fit a non-population dynamic model using mcmc
fitted.focei.fit        Extract the fitted values from the model
focei.eta               Get the FOCEi theta or eta specification for
                        model.
focei.fit               FOCEI Fit for nlmixr
focei.theta             Get the FOCEi theta specification for the model
frwd_selection          Forward covariate selection for nlme-base
                        non-linear mixed effect models
gauss.quad              Sets nodes and weigts of Gauss-Hermite
                        quadrature
gen_saem_user_fn        Generate an SAEM model
getOMEGA                Calculate gnlmm variance-covariance matrix of
                        random effects
gnlmm                   Fit a generalized nonlinear mixed-effect model
instant.stan.extension
                        instant.stan.extension.
invgaussian             Inverse Guassian absorption model
lin_cmt                 concentrations from a linear compartment model
lincmt                  Parameters for a linear compartment model for
                        SAEM
logLik.focei.fit        Extract log likelihood for focei fit
metabolite              Parent/Metabolite dataset
nlme_gof                GOF plots for nlme-based mixed-effect models
nlme_lin_cmpt           Fit nlme-based linear compartment mixed-effect
                        model using closed form solution
nlme_ode                Fit nlme-based mixed-effect model using ODE
                        implementation
nlmixr                  nlmixr fits population PK and PKPD non-linear
                        mixed effects models.
nlmixrBounds.eta.names
                        Get ETA names
nlmixrBounds.focei.upper.lower
                        Get upper/lower/names for THETAs
nlmixrLogo              Messages the nlmixr logo...
nlmixrUI.focei.inits    Get the FOCEi initilizations
nlmixrUI.nlme.specs     Create the nlme specs list for nlmixr nlme
                        solving
nlmixrUI.rxode.pred     Return RxODE model with predictions appended
nlmixrUI.saem.ares      Get initial estimate for ares SAEM.
nlmixrUI.saem.bres      Get initial estimate for bres SAEM.
nlmixrUI.saem.eta.trans
                        Get the eta->eta.trans for SAEM
nlmixrUI.saem.fit       Generate saem.fit user function.
nlmixrUI.saem.init      Get saem initilization list
nlmixrUI.saem.init.omega
                        SAEM's init$omega
nlmixrUI.saem.init.theta
                        Generate SAEM initial estimates for THETA.
nlmixrUI.saem.log.eta   Get model$log.eta for SAEM
nlmixrUI.saem.model     Generate SAEM model list
nlmixrUI.saem.model.omega
                        Get the SAEM model Omega
nlmixrUI.saem.res.mod   Get the SAEM model$res.mod code
nlmixrUI.saem.res.name
                        Get error names for SAEM
nlmixrUI.saem.theta.name
                        Get THETA names for nlmixr's SAEM
nlmixrUI.theta.pars     Get the Parameter function with THETA/ETAs
                        defined
nlmixrUILinCmt          Build linear solved information based on
                        defined parameters.
nlmixrValidate          Validate nlmixr
nlmixrVersion           Dispaly nlmixr's version
nlmixr_fit              Fit a nlmixr model
nmDataConvert           Convert NONMEM/Monolix data to RxODE/nlmixr
                        style data
nmsimplex               Nelder-Mead of simplex search
nobs.focei.fit          Extract the number of observations for the
                        focei fit
par.hist                Parameter history extraction
plot.dyn.ID             Plot of a non-population dynamic model fit
plot.dyn.mcmc           Plot of a non-population dynamic model fit
                        using mcmc
plot.focei.fit          Plot a focei.fit plot
plot.saemFit            Plot an SAEM model fit
prediction              Prediction after a gnlmm fit
print.dyn.ID            Print a non-population dynamic model fit object
print.dyn.mcmc          Summary of a non-population dynamic model fit
                        using mcmc
print.focei.fit         Print a focei fit
print.gnlmm.fit         Print a gnlmm fit
print.nlmixrUI          Print UI function
print.saemFit           Print an SAEM model fit summary
pump                    Pump failure example dataset
rats                    Pregnant Rat Diet Experiment
residuals.focei.fit     Extract residuals from the FOCEI fit
saem.cleanup            Cleanup saem_fit environment by removing dll
                        after the object is no logner used by R.
saem.fit                Fit an SAEM model
saemControl             Control Options for SAEM
simulate.focei.fit      Simulate response based on FOCEi model's
                        datathe fitted object's dataset
summary.dyn.ID          Summary of a non-population dynamic model fit
summary.dyn.mcmc        Summary of a non-population dynamic model fit
                        using mcmc
summary.saemFit         Print an SAEM model fit summary
theo_md                 Multiple dose Theophiline PK data
theo_sd                 Multiple dose Theophiline PK data
traceplot               Produce trace-plot for fit if applicable
vcov.focei.fit          Extract variance/covariance matrix for FOCEI
                        fit
vpc                     Visual predictive check (VPC)
